PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059428_P01
Common NameZm.34249
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 325aa    MW: 35641.1 Da    PI: 7.2937
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059428_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM157.45.9e-49171433128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s
  GRMZM2G059428_P01  17 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGSLNIYRYDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRS 107
                        9*************************99.99***************99999****************************************9 PP

                NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +   ++++glkktLvfy+grap+g+ktdWvm+eyrl
  GRMZM2G059428_P01 108 SadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 143
                        9777888***************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-576170IPR003441NAC domain
PROSITE profilePS5100555.33615170IPR003441NAC domain
PfamPF023657.5E-2517143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAVMAGAASM EVEQDLPGFR FHPTEEELLG FYLSRVVHGK QLHFDIIGSL NIYRYDPWDL  60
PAMAKIGERE WYFFVPRDRK AGSGGRPNRT TERGFWKATG SDRAIRSSAD AKRVIGLKKT  120
LVFYQGRAPR GTKTDWVMNE YRLPDHSAAG RAAPPLPPKE DMVICKIYRK ATPLKELEQR  180
ASAMEEMQRR IGGATATSLV QAAGSTGDDY LSSDDTYDTS FLQFPSSSSP APSGDSYGAP  240
AAAPREAKTE AADATTVTVA STSSSSSLLH AASVAGPAVR HGDLPTLQVP THLGVADWTQ  300
MQDPFQLRSP WQDQLFFSPL AHLLY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-481117210170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059428
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059428_P01
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1070900.0AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001344533.10.0uncharacterized protein LOC100501100
SwissprotQ10S651e-144NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A1D6JMV60.0A0A1D6JMV6_MAIZE; NAC-transcription factor 53
STRINGGRMZM2G059428_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP177038105
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.12e-82NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]