PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G059428_P01 | ||||||||
Common Name | Zm.34249 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 325aa MW: 35641.1 Da PI: 7.2937 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.4 | 5.9e-49 | 17 | 143 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 pGfrFhPt+eel+ +yL + v+gk+l++ ++i +++iy+++PwdLp+++k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d+++ s GRMZM2G059428_P01 17 PGFRFHPTEEELLGFYLSRVVHGKQLHF-DIIGSLNIYRYDPWDLPAMAKIGEREWYFFVPRDRKAGSGGRPNRTTERGFWKATGSDRAIRS 107 9*************************99.99***************99999****************************************9 PP NAM 95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++glkktLvfy+grap+g+ktdWvm+eyrl GRMZM2G059428_P01 108 SadAKRVIGLKKTLVFYQGRAPRGTKTDWVMNEYRL 143 9777888***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-57 | 6 | 170 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.336 | 15 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-25 | 17 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MAVMAGAASM EVEQDLPGFR FHPTEEELLG FYLSRVVHGK QLHFDIIGSL NIYRYDPWDL 60 PAMAKIGERE WYFFVPRDRK AGSGGRPNRT TERGFWKATG SDRAIRSSAD AKRVIGLKKT 120 LVFYQGRAPR GTKTDWVMNE YRLPDHSAAG RAAPPLPPKE DMVICKIYRK ATPLKELEQR 180 ASAMEEMQRR IGGATATSLV QAAGSTGDDY LSSDDTYDTS FLQFPSSSSP APSGDSYGAP 240 AAAPREAKTE AADATTVTVA STSSSSSLLH AASVAGPAVR HGDLPTLQVP THLGVADWTQ 300 MQDPFQLRSP WQDQLFFSPL AHLLY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-48 | 11 | 172 | 10 | 170 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G059428 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G059428_P01 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK107090 | 0.0 | AK107090.1 Oryza sativa Japonica Group cDNA clone:002-121-G12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001344533.1 | 0.0 | uncharacterized protein LOC100501100 | ||||
Swissprot | Q10S65 | 1e-144 | NAC22_ORYSJ; NAC domain-containing protein 22 | ||||
TrEMBL | A0A1D6JMV6 | 0.0 | A0A1D6JMV6_MAIZE; NAC-transcription factor 53 | ||||
STRING | GRMZM2G059428_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1770 | 38 | 105 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17040.1 | 2e-82 | NAC domain containing protein 36 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G059428_P01 |
Publications ? help Back to Top | |||
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