PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059167_P02
Common NameZEAMMB73_531515, Zm.84129
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 857aa    MW: 88749.5 Da    PI: 9.6467
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059167_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.22.4e-10249293244
                        SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                        ++W++eEd  l+ +v+++G g+W+ I ++ +  ++Rt+ q+  rw
  GRMZM2G059167_P02 249 KAWSKEEDADLAAGVQKYGEGNWEDILHKCNfdNTRTPDQLSQRW 293
                        58******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.35243301IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-11243294IPR009057Homeodomain-like
SuperFamilySSF466895.81E-12245295IPR009057Homeodomain-like
SMARTSM007175.1E-6247299IPR001005SANT/Myb domain
PfamPF002498.9E-9249293IPR001005SANT/Myb domain
CDDcd116603.80E-17249293No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MAAENVTCGC MATDPKTGAD VAFPHAGSGE GEGGNRIIWM GRPWDGCGGE DETEPAQSGG  60
IPYWMAAVIS CGVNAWRREG PVGASPSGAV GASAVVVWSP SMRALVPWEA GTCGWVPGGW  120
YDPRDCGGGG WWEEGGGRGL DMGWTVFNHS FTKEPTIRPK LHRFTTATTE ALISGSSQAS  180
GHRINLDTHV LNTRNEKIVR VPSEKQLAQS HRVTNVAGPV SNSKQLAHIG PSAGLLDPNG  240
PSKKRKKPKA WSKEEDADLA AGVQKYGEGN WEDILHKCNF DNTRTPDQLS QRWALKRPGG  300
STKPASTKHA SVGLEERSAA LKALSLAVGP MRGSSALRSG AYPQSIQHKS TVFAPKMPEL  360
RSAVTPSPAP AVPVPVAMPL RVAAQVQAPP HQGHQAPAHA APPKLLNASN KTRKKQAAQP  420
NPTISPSSIQ AAAIAAGGRL ATASTAANFL KVAQSKNAVH IRSLGATSLK PSASFKASIV  480
VEHGTQPGGS QHLEPLNASA VHDVSGVAAV NQSGPLAGAC SETKKALSTA LAPVPCDSEE  540
KEDDSEFCVI TIDDLFPEDA KQPETVDTKA KQPQTTGLKA NQPENADPKV MQQETMDPKS  600
KQSDTVEVEI VDPKDKDMLE FDQYVASQGG HLNTDDLNKS KCTNSVSQAQ GLVGSQQKLI  660
PADGKGSPVT VVGKGKPVTA GVAATGRKTK FPVSHLAAGT PRGIVDTVNA NAPNKTLVRR  720
AAIPAPVPAG CQVRKDAMNS KGNQMTPGNA GSGVPASSQT SVAAQAASKA NLPSSSSQAK  780
PNNMVVNGGN RLVVNPPSSS QASAAVNDAN RAATPQSSNP VNGANNREVN PPPSSQASTA  840
VNGAANKGNV PAAARPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1242246KKRKK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059167
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059167_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008678690.10.0uncharacterized protein LOC103653624
TrEMBLA0A3L6F8T70.0A0A3L6F8T7_MAIZE; Uncharacterized protein
STRINGGRMZM2G059167_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Representative plantOGRP59231520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.15e-11MYB_related family protein