PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G059102_P02 | ||||||||
Common Name | Zm.5854 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21009.1 Da PI: 9.9127 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 80 | 1.6e-25 | 14 | 63 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 ri+n rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s GRMZM2G059102_P02 14 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 63 89********************************************9986 PP | |||||||
2 | K-box | 48.4 | 4e-17 | 90 | 176 | 12 | 98 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ + a+Lk+e+ + ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k +l een +L++++ GRMZM2G059102_P02 90 LQSHMDDGTCARLKEELAETSLKLRQMRGEELQRLSVEQLQELEKTLESGLGSVLKTKSQKILDEISGLERKRTQLIEENSRLKEQV 176 33334455789*************************************************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.2E-33 | 5 | 64 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.137 | 5 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 7 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-25 | 7 | 27 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.27E-37 | 7 | 78 | No hit | No description |
SuperFamily | SSF55455 | 2.35E-29 | 7 | 79 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.1E-24 | 14 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-25 | 27 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.2E-25 | 42 | 63 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 11.547 | 92 | 182 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 7.5E-15 | 98 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVGTGKRERI AIRRIDNLAA RQVTFSKRRR GLFKKAEELS ILCDAEVGLV VFSATGKLFH 60 FASSSMKQVI DRYDSHSKTL QRSEPQSSQL QSHMDDGTCA RLKEELAETS LKLRQMRGEE 120 LQRLSVEQLQ ELEKTLESGL GSVLKTKSQK ILDEISGLER KRTQLIEENS RLKEQVNPCS 180 LSPTF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 1e-19 | 7 | 94 | 3 | 84 | MEF2C |
5f28_B | 1e-19 | 7 | 94 | 3 | 84 | MEF2C |
5f28_C | 1e-19 | 7 | 94 | 3 | 84 | MEF2C |
5f28_D | 1e-19 | 7 | 94 | 3 | 84 | MEF2C |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.5854 | 0.0 | cell lignification| ear| endosperm| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G059102 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G059102_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT061608 | 0.0 | BT061608.1 Zea mays full-length cDNA clone ZM_BFb0164I07 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306702.1 | 1e-121 | MADS-box transcription factor 47 | ||||
Swissprot | Q5K4R0 | 1e-100 | MAD47_ORYSJ; MADS-box transcription factor 47 | ||||
TrEMBL | C0HH02 | 1e-130 | C0HH02_MAIZE; Uncharacterized protein | ||||
STRING | GRMZM2G059102_P03 | 1e-120 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.1 | 8e-65 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G059102_P02 |
Publications ? help Back to Top | |||
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