PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G059102_P01
Common NameMADS68, TIDP3516, Zm.5854
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26365.8 Da    PI: 8.0619
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G059102_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF79.42.5e-251463251
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       ri+n   rqvtfskRr g++KKAeELS+LCdaev +++fs tgkl+ ++s
  GRMZM2G059102_P01 14 RIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFHFAS 63
                       89********************************************9986 PP
2K-box46.91.2e-16911761398
              K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                        ++   +   a+Lk+e+ +   ++R++ Ge+L++Ls+++Lq+Le+ Le++l ++ ++K++ +l++i+ l +k  +l een +L++++
  GRMZM2G059102_P01  91 QSHMDDGTCARLKEELAETSLKLRQMRGEELQRLSVEQLQELEKTLESGLGSVLKTKSQKILDEISGLERKRTQLIEENSRLKEQV 176
                        3334455789*************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.2E-33564IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.137565IPR002100Transcription factor, MADS-box
PROSITE patternPS003500761IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.92E-29779IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-24727IPR002100Transcription factor, MADS-box
CDDcd002652.08E-37778No hitNo description
PfamPF003191.6E-241461IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-242742IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-244263IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.92792182IPR002487Transcription factor, K-box
PfamPF014869.4E-1598176IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020136anatomyear inflorescence
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MVGTGKRERI AIRRIDNLAA RQVTFSKRRR GLFKKAEELS ILCDAEVGLV VFSATGKLFH  60
FASSSMKQVI DRYDSHSKTL QRSEPQSSQL QSHMDDGTCA RLKEELAETS LKLRQMRGEE  120
LQRLSVEQLQ ELEKTLESGL GSVLKTKSQK ILDEISGLER KRTQLIEENS RLKEQVTRMS  180
RMETQLGADP EFVYEEGQSS ESVTNTSYPR PSTDTDDCSD TSLRLGLPLF SSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19794384MEF2C
5f28_B4e-19794384MEF2C
5f28_C4e-19794384MEF2C
5f28_D4e-19794384MEF2C
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.58540.0cell lignification| ear| endosperm| meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G059102
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, shoots and developing panicles. {ECO:0000269|PubMed:15682279}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Function -- GeneRIF ? help Back to Top
  1. The protein encoded by this gene physically interacts with the Opaque2 protein (Gene:542375). MADS47 RNAi transgenic plants exhibited reduction of alpha zein and 50 kD gamma zein transcripts. The protein binds the CATGT motif in promoters of these zein genes.
    [PMID: 27077660]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G059102_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0360480.0BT036048.1 Zea mays full-length cDNA clone ZM_BFb0093D17 mRNA, complete cds.
GenBankBT0873240.0BT087324.1 Zea mays full-length cDNA clone ZM_BFb0039N23 mRNA, complete cds.
GenBankBT0878520.0BT087852.1 Zea mays full-length cDNA clone ZM_BFb0227O08 mRNA, complete cds.
GenBankEU9561480.0EU956148.1 Zea mays clone 1558111 MADS-box transcription factor 47 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001306702.11e-168MADS-box transcription factor 47
SwissprotQ5K4R01e-126MAD47_ORYSJ; MADS-box transcription factor 47
TrEMBLB4FG101e-167B4FG10_MAIZE; MADS transcription factor
STRINGGRMZM2G059102_P031e-165(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.18e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  4. Qiao Z, et al.
    ZmMADS47 Regulates Zein Gene Transcription through Interaction with Opaque2.
    PLoS Genet., 2016. 12(4): p. e1005991
    [PMID:27077660]