PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G058868_P01 | ||||||||
Common Name | umc2278, ZEAMMB73_911241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 315aa MW: 33507 Da PI: 7.7285 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H GRMZM2G058868_P01 71 YSCTFCQREFRSAQALGGHMNVH 93 99*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.74E-6 | 68 | 98 | No hit | No description |
SMART | SM00355 | 0.0053 | 71 | 93 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.198 | 71 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MNSSSATAMD QIGKYWGMWG ARRSSSSSST IPISAWAAAY GGSSEPSWEE QAFARDAAEH 60 LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RLGGSSSPED VHATTNDQPH 120 PQQGALLYRA AASNPSTTTP STTAAAGTTA AGPAAAITIA GAGDGDANTT TTTTYLSRII 180 KESKNKRFMP MPDHSVAGMR EDQAAAIDDH RHNEDGDSWR SASAAKKRRR LDHPLATAAA 240 LLIFVQPAPK AATNVAACES QGGADHETKV PHTTTLTSPS SSSPLLLDQR HELDLELRLG 300 TTPKVTYIHG NDTRS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 66 | 93 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 66 | 93 | 2 | 29 | Transcriptional regulator SUPERMAN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 226 | 230 | KRRRL |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G058868 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G058868_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038716 | 0.0 | BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds. | |||
GenBank | EU972109 | 0.0 | EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151753.1 | 0.0 | uncharacterized protein LOC100285388 | ||||
TrEMBL | B4FNM8 | 0.0 | B4FNM8_MAIZE; Putative transcriptional regulator RABBIT EARS | ||||
STRING | GRMZM2G058868_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7845 | 29 | 43 | Representative plant | OGRP576 | 15 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 1e-22 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G058868_P01 |
Entrez Gene | 100285388 |
Publications ? help Back to Top | |||
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