PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G058868_P01
Common Nameumc2278, ZEAMMB73_911241
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C2H2
Protein Properties Length: 315aa    MW: 33507 Da    PI: 7.7285
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G058868_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000187193123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C + F++   L  H+++H
  GRMZM2G058868_P01 71 YSCTFCQREFRSAQALGGHMNVH 93
                       99*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.74E-66898No hitNo description
SMARTSM003550.00537193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1987198IPR007087Zinc finger, C2H2
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MNSSSATAMD QIGKYWGMWG ARRSSSSSST IPISAWAAAY GGSSEPSWEE QAFARDAAEH  60
LGGCVWPPRS YSCTFCQREF RSAQALGGHM NVHRRDRALL RLGGSSSPED VHATTNDQPH  120
PQQGALLYRA AASNPSTTTP STTAAAGTTA AGPAAAITIA GAGDGDANTT TTTTYLSRII  180
KESKNKRFMP MPDHSVAGMR EDQAAAIDDH RHNEDGDSWR SASAAKKRRR LDHPLATAAA  240
LLIFVQPAPK AATNVAACES QGGADHETKV PHTTTLTSPS SSSPLLLDQR HELDLELRLG  300
TTPKVTYIHG NDTRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A1e-126693229superman protein
2l1o_A1e-126693229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226230KRRRL
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G058868
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G058868_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0387160.0BT038716.1 Zea mays full-length cDNA clone ZM_BFb0313F12 mRNA, complete cds.
GenBankEU9721090.0EU972109.1 Zea mays clone 375181 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151753.10.0uncharacterized protein LOC100285388
TrEMBLB4FNM80.0B4FNM8_MAIZE; Putative transcriptional regulator RABBIT EARS
STRINGGRMZM2G058868_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.11e-22C2H2 family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]