PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G058588_P01
Common NameSBP28, ZEAMMB73_142916
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family SBP
Protein Properties Length: 396aa    MW: 43269 Da    PI: 8.0074
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G058588_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP127.74.3e-40176254178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +Cq+egC+adls ak+yhrrhkvC++hskapvv+ + g++qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++
  GRMZM2G058588_P01 176 RCQAEGCKADLSGAKRYHRRHKVCDHHSKAPVVVtAGGMHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 254
                        6******************************98725689*************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.103.1E-33171239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114130.026174252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036129.16E-37175255IPR004333Transcription factor, SBP-box
PfamPF031101.6E-30177251IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MMNLSAAAAA AANACDEFPY APPNAAAPPS LFPIMEQESS IHREHQQQQL GLGYNPEPNS  60
LALLPPSDAA HHTTIAAGPH DILQFYPASA SHYLAASNPY GHFAGSSSFH QSSSSSSSYY  120
YPPPPQAAPE YYFPTLVSSA EENMASFAAT QLGLNLGYRT YFPPRGGYTY GHHPPRCQAE  180
GCKADLSGAK RYHRRHKVCD HHSKAPVVVT AGGMHQRFCQ QCSRFHLLDE FDDAKKSCRK  240
RLADHNRRRR KSKPSDADAG DKKRAHANKA APAKDKAGSS SKHMHIAGLG TQILGSTLLS  300
KEQDQAMDLG EVVKEAVDPK GKASMLQHHG IHQQQHHGIH QQHHGFPFHS SSAGSSDTTS  360
NIAQVQEPSL GFHHQHHQHS NVLQLGQAMF DLDFDH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-261772511184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1246263RRRRKSKPSDADAGDKKR
2247252RRRKSK
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G058588
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Developing leaves. Present at highest levels in very young ligules and auricles. Present pre- and post-ligule and auricle development.
UniprotTISSUE SPECIFICITY: Leaf ligular region, blade and sheath.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the formation of ligules and auricles during leaf organogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G058588_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankZMU894960.0U89496.1 Zea mays liguleless1 protein (liguleless1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008663682.10.0protein LIGULELESS 1-like
SwissprotO040030.0LG1_MAIZE; Protein LIGULELESS 1
TrEMBLK7TP970.0K7TP97_MAIZE; Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
STRINGGRMZM2G058588_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69903452
Representative plantOGRP9717230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.11e-41squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Sylvester AW,Cande WZ,Freeling M
    Division and differentiation during normal and liguleless-1 maize leaf development.
    Development, 1990. 110(3): p. 985-1000
    [PMID:2088734]