PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G058518_P01
Common NameANAC010, LOC100282443
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 323aa    MW: 35357.5 Da    PI: 9.0907
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G058518_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1059.7e-33702111128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee........vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                        lp+G++F+Ptd+el+ e+L+ k++ +  +l++        +i+   +i++++P++Lp  v ++    +fF++ +k+y+tg+rk+r+++    
  GRMZM2G058518_P01  70 LPAGVKFDPTDQELL-EHLEGKARPDARKLHHplidefipTIEGEnGICYTHPERLP-GVGKDGLIRHFFHRPSKAYTTGTRKRRKVHtdeq 159
                        799************.99****9988844433444444434666557**********.555555677******************7444565 PP

                NAM  80 ..sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                          + +W++tgk+++v++ +g+l+g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  GRMZM2G058518_P01 160 ggETRWHKTGKTRPVFT-GGKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 211
                        55778************.9*************6657999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.37E-3862230IPR003441NAC domain
PROSITE profilePS5100533.13670230IPR003441NAC domain
PfamPF023654.1E-1571211IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MTWCNSFNDV RAVENNLATA AAVAAAAAKK QQQQQASSHV NLIRTCPSCG HRAQYEQVQA  60
AATIQDLPGL PAGVKFDPTD QELLEHLEGK ARPDARKLHH PLIDEFIPTI EGENGICYTH  120
PERLPGVGKD GLIRHFFHRP SKAYTTGTRK RRKVHTDEQG GETRWHKTGK TRPVFTGGKL  180
KGYKKILVLY TNYGKQRKPE KTNWVMHQYH LGSDEEEKDG ELVVSKVFYQ TQPRQCGSGS  240
ATAKDAIPLA ANAATDHHHH HHHDGGNGGG NNMLKEAGIV DFYSPAALIS YNQAASNSRV  300
AASAHLVPNF EVHTTSGAAG FGP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.362930.0cell culture
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G058518
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G058518_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0549450.0BT054945.1 Zea mays full-length cDNA clone ZM_BFc0091A12 mRNA, complete cds.
GenBankBT0629760.0BT062976.1 Zea mays full-length cDNA clone ZM_BFc0013H24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001148826.10.0uncharacterized protein LOC100282443
SwissprotO494591e-123NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A3L6FQV80.0A0A3L6FQV8_MAIZE; NAC domain-containing protein 73
TrEMBLB6T7F90.0B6T7F9_MAIZE; ANAC010
TrEMBLK0DCV20.0K0DCV2_MAIZE; NAC82 NAC type transcription factor (Fragment)
STRINGGRMZM2G058518_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30753786
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-122NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  3. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  4. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]