PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G058197_P01 | ||||||||
Common Name | LOC103633352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 815aa MW: 90016.5 Da PI: 6.7915 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 62 | 84 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F r nL+ H r H GRMZM2G058197_P01 62 FVCEVCGKGFQRDQNLQLHRRGH 84 89******************988 PP | |||||||
2 | zf-C2H2 | 15.5 | 4.9e-05 | 141 | 162 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 Cp Cgk++ + +Lk H +t+ GRMZM2G058197_P01 141 ACPRCGKRYAVQADLKAHAKTC 162 6******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.83E-8 | 61 | 84 | No hit | No description |
PROSITE profile | PS50157 | 11.635 | 62 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 62 | 84 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 62 | 84 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 64 | 84 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 87 | 105 | 135 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 128 | 161 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.83E-8 | 135 | 160 | No hit | No description |
PROSITE profile | PS50157 | 8.663 | 140 | 168 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 90 | 140 | 160 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 815 aa Download sequence Send to blast |
MPPPHPTDAE AGPEQVAPTE AVPLAAAAPA PVKKKRNLPG TPDPDAEVIA LSPGTLLATN 60 RFVCEVCGKG FQRDQNLQLH RRGHNLPWRL RQRGPGAAPP RRRVYVCPEP GCVHHSPTRA 120 LGDLTGIKKH FCRKHGEKRW ACPRCGKRYA VQADLKAHAK TCGTREYRCD CGTLFTRRDS 180 FVTHRAFCGA LGEETGRALA PPAPPSPRPP DLEAEENVDN DKEEEENEDS ALAEVEVPQR 240 VEVAVPEEPE PEPQRIPSPP PLPQEPPCRP SPPPLPQEQP RRVSPPPLPK EPPCHHPTPP 300 PLPKEPQRLP FPPEQQAVVA LVPNVDEPEV AAVGTVAAKL EDETDQDETT CFQEADQYKD 360 AELEVSNLLD KDTPMLPCFL PSPSEAIGTD GSSTTCGAGG SVSNSIVPST TTNTFAGLFA 420 SATTSTTSQS RSLRDLIGVD PTFLCLAIGA PSLFPQTSAS NSGTFAPPPA PHMSATALLQ 480 KATEAGATQS SSSFLKEFGL ASSSSSPRPK QQQPHGRVAE TSTDPWQYRN SNQQMEMERH 540 QSHQRREMES SSQPWQHPRI TQQMEMERHH QRSHQQREME SSSQPWQHPR STQQMEMERH 600 HQRSHQQREM ESSSQPWQHP RSTQQMEMER HHQRNHRQRE TESSSQQWHH HHHHPNDQMM 660 GLESYRSNQQ MEMDPSSQQR WAQHQRSNQQ QQMEMMERHH LSNQQIRSTQ QMERRAMVSG 720 GGLGLGLAYE SGNPGLPLPD LMTGPSPLLG PKPATLDFLG LGIGGTMGGS TASRGLPALM 780 VGRELDMGPS AQVPPAAAAA PWEDAKRKTN GRTIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 6e-29 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 6e-29 | 136 | 197 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.64314 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G058197 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G058197_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066358 | 0.0 | BT066358.1 Zea mays full-length cDNA clone ZM_BFc0009B22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653283.1 | 0.0 | protein indeterminate-domain 1 | ||||
TrEMBL | A0A1D6IHW9 | 0.0 | A0A1D6IHW9_MAIZE; Protein indeterminate-domain 11 | ||||
STRING | GRMZM2G058197_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11829 | 28 | 36 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03840.1 | 1e-88 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G058197_P01 |
Entrez Gene | 103633352 |