PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G057408_P02
Common NameLOC100283068, MYBR77
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 336aa    MW: 36305.9 Da    PI: 7.0895
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G057408_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.27.8e-1373117147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        r +WT+ E++++++a +++  + Wk+I +++g  +t  q++s+ qky
  GRMZM2G057408_P02  73 RESWTEPEHDKFLEALQLFDRD-WKKIEAYVG-SKTVIQIRSHAQKY 117
                        789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.36E-1667123IPR009057Homeodomain-like
PROSITE profilePS5129414.62868122IPR017930Myb domain
TIGRFAMsTIGR015571.2E-1871120IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.608.1E-672113IPR009057Homeodomain-like
SMARTSM007172.7E-1072120IPR001005SANT/Myb domain
PfamPF002491.3E-1073117IPR001005SANT/Myb domain
CDDcd001678.51E-875118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVSMSTTPKP LDSAVVSAAV DGGDEGGGGG GGGKKQAHGA VMAPPPMVVP AAAPAAEEEV  60
RKVRKPYTIT KSRESWTEPE HDKFLEALQL FDRDWKKIEA YVGSKTVIQI RSHAQKYFLK  120
VQKNGTGEHL PPPRPKRKAA HPYPQKASKN APAVSQAILS QEQPTQREQG SVMPMDTATV  180
RNTNANVAVP SWDNTLAQPF SAGHVQGAAA TNNCSSSMES PSGTWPTSEA VEQENMVPPL  240
RAMPDFAQVY NFLGSIFDPD TSGHLQRLKA MDPVDIETAL LLMRNLSMNL RSPDFEQHRR  300
LLSSYSYGGA DHVKSEAMEN LGSPQSGHLP SLVTSE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.857180.0ear| embryo| meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G057408
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G057408_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0660740.0BT066074.1 Zea mays full-length cDNA clone ZM_BFb0229E08 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149442.20.0uncharacterized protein LOC100283068
SwissprotQ8H0W33e-97RVE6_ARATH; Protein REVEILLE 6
TrEMBLC0PCQ50.0C0PCQ5_MAIZE; MYB-related transcription factor
STRINGGRMZM2G057408_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109638111
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.27e-74MYB_related family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]