PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G057386_P01 | ||||||||
Common Name | LOC100384725 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 34500.6 Da PI: 6.0984 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.4 | 2.4e-20 | 143 | 194 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrdp+++g r++lg+++ta eAa+a+++a+ +++g+ GRMZM2G057386_P01 143 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 194 8********.***********8876..**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 142 | 202 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.62E-30 | 143 | 202 | No hit | No description |
SMART | SM00380 | 4.7E-37 | 143 | 207 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 143 | 202 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.5E-14 | 143 | 193 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.25 | 143 | 201 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 144 | 155 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-13 | 183 | 203 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MDFSGEIDDF SLQLIREQLL GGEASLPIVT NAAAYSASVV HHPTQAEFHQ PAAFLPQPSH 60 VAYVDLTNEY AADATVASAG GEAAFRAEPV MIRFGGEPSP VSDPSRRPLL TISLPPASHA 120 WGPAAVPLEA PGAAALDAND FRKYRGVRQR PWGKFAAEIR DPKKRGSRVW LGTYDTAIEA 180 ARAYDRAAFR MRGAKAILNF PNEVGTRGAD FLAPPPPPPQ AAATSQNKRK LMHDAEATAT 240 AGAGAGAEPA KSVKAEASGS PASSLSPATT TTPASTVTTC SPSSDAGAGH EMFPVTPSSW 300 TWEQLEGVFG ILSPLSPHPQ LGFPEVTVN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-27 | 142 | 206 | 4 | 68 | ATERF1 |
3gcc_A | 2e-27 | 142 | 206 | 4 | 68 | ATERF1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.31024 | 0.0 | ovary |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G057386 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G057386_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT084056 | 0.0 | BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170666.1 | 0.0 | uncharacterized protein LOC100384725 | ||||
TrEMBL | C4IZQ9 | 0.0 | C4IZQ9_MAIZE; Ethylene-responsive transcription factor ERF105 | ||||
STRING | GRMZM2G057386_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 6e-24 | ethylene responsive element binding factor 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G057386_P01 |
Entrez Gene | 100384725 |