PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G057386_P01
Common NameLOC100384725
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 329aa    MW: 34500.6 Da    PI: 6.0984
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G057386_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.4e-20143194256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        +y+GVr+++ +g+++AeIrdp+++g   r++lg+++ta eAa+a+++a+ +++g+
  GRMZM2G057386_P01 143 KYRGVRQRP-WGKFAAEIRDPKKRG--SRVWLGTYDTAIEAARAYDRAAFRMRGA 194
                        8********.***********8876..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.3E-32142202IPR001471AP2/ERF domain
CDDcd000182.62E-30143202No hitNo description
SMARTSM003804.7E-37143207IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-22143202IPR016177DNA-binding domain
PfamPF008471.5E-14143193IPR001471AP2/ERF domain
PROSITE profilePS5103224.25143201IPR001471AP2/ERF domain
PRINTSPR003672.0E-13144155IPR001471AP2/ERF domain
PRINTSPR003672.0E-13183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MDFSGEIDDF SLQLIREQLL GGEASLPIVT NAAAYSASVV HHPTQAEFHQ PAAFLPQPSH  60
VAYVDLTNEY AADATVASAG GEAAFRAEPV MIRFGGEPSP VSDPSRRPLL TISLPPASHA  120
WGPAAVPLEA PGAAALDAND FRKYRGVRQR PWGKFAAEIR DPKKRGSRVW LGTYDTAIEA  180
ARAYDRAAFR MRGAKAILNF PNEVGTRGAD FLAPPPPPPQ AAATSQNKRK LMHDAEATAT  240
AGAGAGAEPA KSVKAEASGS PASSLSPATT TTPASTVTTC SPSSDAGAGH EMFPVTPSSW  300
TWEQLEGVFG ILSPLSPHPQ LGFPEVTVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27142206468ATERF1
3gcc_A2e-27142206468ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.310240.0ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G057386
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00549DAPTransfer from AT5G47230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G057386_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0840560.0BT084056.1 Zea mays full-length cDNA clone ZM_BFb0069B11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001170666.10.0uncharacterized protein LOC100384725
TrEMBLC4IZQ90.0C4IZQ9_MAIZE; Ethylene-responsive transcription factor ERF105
STRINGGRMZM2G057386_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.16e-24ethylene responsive element binding factor 5