PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G057260_P01
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 472aa    MW: 51814.9 Da    PI: 4.8721
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G057260_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-092122521055
                        HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r+RR+riN+++  L+ l+P+      +K++ +++Le+A +Y+k Lq
  GRMZM2G057260_P01 212 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 252
                        9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.494202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-13205268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-11208263IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10208257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-11211256No hitNo description
PfamPF000101.1E-6212252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003202.8316351IPR001680WD40 repeat
PROSITE profilePS5029419.538319445IPR017986WD40-repeat-containing domain
SuperFamilySSF509781.93E-29326470IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.105.7E-32326470IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003200.16354395IPR001680WD40 repeat
PROSITE profilePS5008211.31363404IPR001680WD40 repeat
PROSITE patternPS006780382396IPR019775WD40 repeat, conserved site
SMARTSM003207.1E-8398436IPR001680WD40 repeat
PfamPF004000.0011401436IPR001680WD40 repeat
PROSITE profilePS5008210.709405445IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MEIDMMAQFL GADDDHCFTY DYEHDVDESM EAIAALLLPT LDTDSNSSSS CFNDDVPPQC  60
WPQPGHSSSV TTLLGPAESF EFPVMDLSFP TSDFDPQSHC ATPYLTEDLG SLQHGKHSPV  120
MEEEAADVEP AAKKRKASAT ATATAKGSKK SRKASKKDCI VDDDDVYVDP QSSGSCTSEE  180
GNFEGNTYSS AKKTCTRASR GGATDPQSLY ARKRRERINE RLRILQNLVP NGTKVDISTM  240
LEEAAQYVKF LQLQIKLLSS DDMWMYAPIA YNGINISNVD LNIPALQKAV GIHRRPSMRA  300
SSCVDGDLSM PLRYATRMSR RVLVMVEAVT VHVTQKYFVS ASKDNSWCFY DISTGSCLTH  360
VGEASGQEGY TSASFHPDGL ILGTGTTDAV VKIWDVKAQS NVAKFEGHVG PVTAMSFSEN  420
GYFLATAAHD GVKLWDLRKL RNFRTFSSYD LDTPTNTVEF DFSGNYLAIG LI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4lg8_A9e-43309470142303Pre-mRNA-processing factor 19
6ff7_H3e-42326470309453Pre-mRNA-processing factor 19
6ff7_I3e-42326470309453Pre-mRNA-processing factor 19
6ff7_J3e-42326470309453Pre-mRNA-processing factor 19
6icz_q3e-42326470309453Pre-mRNA-processing factor 19
6icz_r3e-42326470309453Pre-mRNA-processing factor 19
6icz_s3e-42326470309453Pre-mRNA-processing factor 19
6icz_t3e-42326470309453Pre-mRNA-processing factor 19
6id0_q3e-42326470309453Pre-mRNA-processing factor 19
6id0_r3e-42326470309453Pre-mRNA-processing factor 19
6id0_s3e-42326470309453Pre-mRNA-processing factor 19
6id0_t3e-42326470309453Pre-mRNA-processing factor 19
6id1_q3e-42326470309453Pre-mRNA-processing factor 19
6id1_r3e-42326470309453Pre-mRNA-processing factor 19
6id1_s3e-42326470309453Pre-mRNA-processing factor 19
6id1_t3e-42326470309453Pre-mRNA-processing factor 19
6qdv_t3e-42326470309453Pre-mRNA-processing factor 19
6qdv_u3e-42326470309453Pre-mRNA-processing factor 19
6qdv_v3e-42326470309453Pre-mRNA-processing factor 19
6qdv_w3e-42326470309453Pre-mRNA-processing factor 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.942330.0aerial organ| cell lignification| ear| embryo| meristem| pericarp| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G057260
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G057260_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0340880.0BT034088.1 Zea mays full-length cDNA clone ZM_BFc0032E03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020396638.10.0transcription factor bHLH54
TrEMBLA0A1D6IIA80.0A0A1D6IIA8_MAIZE; Transcription factor bHLH85
STRINGGRMZM2G057260_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.19e-36bHLH family protein