PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G057260_P01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | bHLH | ||||||||
Protein Properties | Length: 472aa MW: 51814.9 Da PI: 4.8721 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 29 | 2e-09 | 212 | 252 | 10 | 55 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L+ l+P+ +K++ +++Le+A +Y+k Lq GRMZM2G057260_P01 212 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAAQYVKFLQ 252 9******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.494 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-13 | 205 | 268 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-11 | 208 | 263 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-10 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.56E-11 | 211 | 256 | No hit | No description |
Pfam | PF00010 | 1.1E-6 | 212 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00320 | 2.8 | 316 | 351 | IPR001680 | WD40 repeat |
PROSITE profile | PS50294 | 19.538 | 319 | 445 | IPR017986 | WD40-repeat-containing domain |
SuperFamily | SSF50978 | 1.93E-29 | 326 | 470 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 5.7E-32 | 326 | 470 | IPR015943 | WD40/YVTN repeat-like-containing domain |
SMART | SM00320 | 0.16 | 354 | 395 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 11.31 | 363 | 404 | IPR001680 | WD40 repeat |
PROSITE pattern | PS00678 | 0 | 382 | 396 | IPR019775 | WD40 repeat, conserved site |
SMART | SM00320 | 7.1E-8 | 398 | 436 | IPR001680 | WD40 repeat |
Pfam | PF00400 | 0.0011 | 401 | 436 | IPR001680 | WD40 repeat |
PROSITE profile | PS50082 | 10.709 | 405 | 445 | IPR001680 | WD40 repeat |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 472 aa Download sequence Send to blast |
MEIDMMAQFL GADDDHCFTY DYEHDVDESM EAIAALLLPT LDTDSNSSSS CFNDDVPPQC 60 WPQPGHSSSV TTLLGPAESF EFPVMDLSFP TSDFDPQSHC ATPYLTEDLG SLQHGKHSPV 120 MEEEAADVEP AAKKRKASAT ATATAKGSKK SRKASKKDCI VDDDDVYVDP QSSGSCTSEE 180 GNFEGNTYSS AKKTCTRASR GGATDPQSLY ARKRRERINE RLRILQNLVP NGTKVDISTM 240 LEEAAQYVKF LQLQIKLLSS DDMWMYAPIA YNGINISNVD LNIPALQKAV GIHRRPSMRA 300 SSCVDGDLSM PLRYATRMSR RVLVMVEAVT VHVTQKYFVS ASKDNSWCFY DISTGSCLTH 360 VGEASGQEGY TSASFHPDGL ILGTGTTDAV VKIWDVKAQS NVAKFEGHVG PVTAMSFSEN 420 GYFLATAAHD GVKLWDLRKL RNFRTFSSYD LDTPTNTVEF DFSGNYLAIG LI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4lg8_A | 9e-43 | 309 | 470 | 142 | 303 | Pre-mRNA-processing factor 19 |
6ff7_H | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6ff7_I | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6ff7_J | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6icz_q | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6icz_r | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6icz_s | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6icz_t | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id0_q | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id0_r | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id0_s | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id0_t | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id1_q | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id1_r | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id1_s | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6id1_t | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6qdv_t | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6qdv_u | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6qdv_v | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
6qdv_w | 3e-42 | 326 | 470 | 309 | 453 | Pre-mRNA-processing factor 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94233 | 0.0 | aerial organ| cell lignification| ear| embryo| meristem| pericarp| shoot| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G057260 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G057260_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT034088 | 0.0 | BT034088.1 Zea mays full-length cDNA clone ZM_BFc0032E03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020396638.1 | 0.0 | transcription factor bHLH54 | ||||
TrEMBL | A0A1D6IIA8 | 0.0 | A0A1D6IIA8_MAIZE; Transcription factor bHLH85 | ||||
STRING | GRMZM2G057260_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12496 | 29 | 35 | Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 9e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G057260_P01 |