PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056920_P03
Common NameLOC100193411, ZEAMMB73_084342
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 328aa    MW: 34156.2 Da    PI: 7.1108
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056920_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH253.3e-086691227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+lC+ +     Ck GdrC+FaHg+
  GRMZM2G056920_P03 66 KTRLCNKYNTAEGCKWGDRCHFAHGE 91
                       8***********************96 PP
2zf-CCCH33.57.2e-11294319127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+ C +fa+ G C+yG++C+FaHg+
  GRMZM2G056920_P03 294 FKTKMCENFAK-GSCSYGGKCHFAHGE 319
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.2871932IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-146194IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.22E-86395IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7376492IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-56691IPR000571Zinc finger, CCCH-type
SMARTSM003560.426691IPR000571Zinc finger, CCCH-type
SuperFamilySSF547913.51E-16207286IPR004088K Homology domain, type 1
SMARTSM003222.6E-12213285IPR004087K Homology domain
PROSITE profilePS5008416.269214280IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.9E-16216284IPR004088K Homology domain, type 1
PfamPF000131.0E-12216281IPR004088K Homology domain, type 1
CDDcd001054.72E-4236280No hitNo description
Gene3DG3DSA:4.10.1000.103.2E-16292325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051293320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-8293324IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6293319IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-7294319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MVLLLLILII FSSCSTYGCP FGEGCHFVHY FPGDYRAVSE MTNLGGATIA PPGGMMMDGP  60
PTPIVKTRLC NKYNTAEGCK WGDRCHFAHG ESELGKSMMD NYMPPPIGPP PTGYFAPPPM  120
APPPMAPPPM APPPMAPLPM APPPMAPPPM APPPMAPPPM APLPMAPPPM APPPMAPPPM  180
APPPMAPLPM APPPMAPPPM ANPGLATPAS FGAYATAKIS VDASLAGGII GKGGANIKQI  240
SSVTGAKVVI QEDRHESDTS LKNIEFEGTF DQIRNASAMV IELIVSISGI GSNFKTKMCE  300
NFAKGSCSYG GKCHFAHGES ELRKPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.350750.0pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056920
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056920_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356680.0BT035668.1 Zea mays full-length cDNA clone ZM_BFb0075O04 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339697.10.0Zinc finger CCCH domain-containing protein 52
SwissprotQ7F8R02e-61C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLB4FEY00.0B4FEY0_MAIZE; Uncharacterized protein
TrEMBLK0DF440.0K0DF44_MAIZE; C3H38 C3H type transcription factor (Fragment)
STRINGGRMZM2G056920_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.13e-28C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]