PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056920_P02
Common NameLOC100193411, ZEAMMB73_084342
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 288aa    MW: 29687.9 Da    PI: 7.8239
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056920_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.7e-082651227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                       kt+lC+ +     Ck GdrC+FaHg+
  GRMZM2G056920_P02 26 KTRLCNKYNTAEGCKWGDRCHFAHGE 51
                       8***********************96 PP
2zf-CCCH33.76e-11254279127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+ C +fa+ G C+yG++C+FaHg+
  GRMZM2G056920_P02 254 FKTKMCENFAK-GSCSYGGKCHFAHGE 279
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.4E-142154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-82355IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7372452IPR000571Zinc finger, CCCH-type
SMARTSM003560.422651IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-52651IPR000571Zinc finger, CCCH-type
SuperFamilySSF547912.78E-16167246IPR004088K Homology domain, type 1
SMARTSM003222.6E-12173245IPR004087K Homology domain
PROSITE profilePS5008416.269174240IPR004088K Homology domain, type 1
PfamPF000138.1E-13176241IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.5E-16176244IPR004088K Homology domain, type 1
CDDcd001057.97E-4196240No hitNo description
Gene3DG3DSA:4.10.1000.102.7E-16252285IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6253279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051253280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-8253284IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-7254279IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MTNLGGATIA PPGGMMMDGP PTPIVKTRLC NKYNTAEGCK WGDRCHFAHG ESELGKSMMD  60
NYMPPPIGPP PTGYFAPPPM APPPMAPPPM APPPMAPLPM APPPMAPPPM APPPMAPPPM  120
APLPMAPPPM APPPMAPPPM APPPMAPLPM APPPMAPPPM ANPGLATPAS FGAYATAKIS  180
VDASLAGGII GKGGANIKQI SSVTGAKVVI QEDRHESDTS LKNIEFEGTF DQIRNASAMV  240
IELIVSISGI GSNFKTKMCE NFAKGSCSYG GKCHFAHGES ELRKPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.350750.0pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056920
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056920_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0356680.0BT035668.1 Zea mays full-length cDNA clone ZM_BFb0075O04 mRNA, complete cds.
GenBankBT0681700.0BT068170.1 Zea mays full-length cDNA clone ZM_BFb0072P03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339697.10.0Zinc finger CCCH domain-containing protein 52
RefseqXP_008676550.10.0zinc finger CCCH domain-containing protein 52 isoform X1
SwissprotQ7F8R03e-63C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLC0PIQ10.0C0PIQ1_MAIZE; Uncharacterized protein
TrEMBLK7URF30.0K7URF3_MAIZE; Zinc finger CCCH domain-containing protein 52
STRINGGRMZM2G056920_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.17e-29C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]