PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056920_P01
Common NameLOC100193411, ZEAMMB73_084342
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family C3H
Protein Properties Length: 358aa    MW: 37330.4 Da    PI: 7.9495
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056920_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-0896121227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        kt+lC+ +     Ck GdrC+FaHg+
  GRMZM2G056920_P01  96 KTRLCNKYNTAEGCKWGDRCHFAHGE 121
                        8***********************96 PP
2zf-CCCH33.38e-11324349127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                        +kt+ C +fa+ G C+yG++C+FaHg+
  GRMZM2G056920_P01 324 FKTKMCENFAK-GSCSYGGKCHFAHGE 349
                        69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.5163462IPR000571Zinc finger, CCCH-type
SMARTSM003568.23461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.01E-53560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-73659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-1491124IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-893125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.73794122IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-596121IPR000571Zinc finger, CCCH-type
SMARTSM003560.4296121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547914.09E-16237316IPR004088K Homology domain, type 1
SMARTSM003222.6E-12243315IPR004087K Homology domain
PROSITE profilePS5008416.269244310IPR004088K Homology domain, type 1
PfamPF000131.2E-12246311IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.2E-16246314IPR004088K Homology domain, type 1
CDDcd001055.99E-4266310No hitNo description
Gene3DG3DSA:4.10.1000.103.6E-16322355IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.26E-8323354IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-6323349IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.051323350IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-7324349IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MDGSRKRVDA EDVKGDSTGG KRLRASESFQ SGVGSKVKLC TNFFSTYGCP FGEGCHFVHY  60
FPGDYRAVSE MTNLGGATIA PPGGMMMDGP PTPIVKTRLC NKYNTAEGCK WGDRCHFAHG  120
ESELGKSMMD NYMPPPIGPP PTGYFAPPPM APPPMAPPPM APPPMAPLPM APPPMAPPPM  180
APPPMAPPPM APLPMAPPPM APPPMAPPPM APPPMAPLPM APPPMAPPPM ANPGLATPAS  240
FGAYATAKIS VDASLAGGII GKGGANIKQI SSVTGAKVVI QEDRHESDTS LKNIEFEGTF  300
DQIRNASAMV IELIVSISGI GSNFKTKMCE NFAKGSCSYG GKCHFAHGES ELRKPAAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.350750.0pollen| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056920
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056920_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0541560.0BT054156.1 Zea mays full-length cDNA clone ZM_BFb0139I20 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001339697.10.0Zinc finger CCCH domain-containing protein 52
SwissprotQ7F8R02e-63C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLK7URF30.0K7URF3_MAIZE; Zinc finger CCCH domain-containing protein 52
STRINGGRMZM2G056920_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.16e-28C3H family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]