PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056400_P01
Common Namekan1, Zm.41375
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family G2-like
Protein Properties Length: 458aa    MW: 47557.7 Da    PI: 8.7102
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056400_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.65.1e-32252305255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GRMZM2G056400_P01 252 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 305
                        9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.87E-15249306IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28250306IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-23252305IPR006447Myb domain, plants
PfamPF002496.9E-7253304IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0008018anatomytransition vascular leaf
PO:0009025anatomyvascular leaf
PO:0020040anatomyleaf base
PO:0025142anatomyleaf tip
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEARAASVPD LSLHISLPSS AASPSPAPGL GAGGVGRGAQ PSGGDPWRRL NGSTASTELS  60
LSPPPPRQEA AAGDVLPWRL RPPAANYSSS TAEATFLPVT VPRLSFDAAA EAAPARPING  120
VPVYSSPRTG AAHPFLGAGG EYRQCHHHKA AVGLYNPYHS SSSWPSSLRS TTTAPLGAVA  180
PPASDPTASS YLSPSAYHRM LSSTGRLHLQ GVLADTLRGY GSGHHHRQHL GSLAAARYMP  240
RLPASRRGMR APRMRWTSSL HARFVHAVEL LGGHERATPK SVLELMDVKD LTLAHVKSHL  300
QMYRTVKSTD KPPAATSSGG GGPPVDGGGG SGDDDHPSDW RRAPSSSAGR DVSPQAFTGH  360
RSASSDGAAS HAGGDVECSS ADDSDGGRPR SASPPRLPPP SACNAADTLH SVGVPYSTTE  420
DMEPACRSAG LQHSLNHEMS CPPSLEFTLG RPNWNGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-16253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-16253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-16253307357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-16253307357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056400
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers. {ECO:0000269|PubMed:18594992}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056400_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9350030.0EU935003.1 Zea mays cultivar B73 kanadi1 (kan1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001295437.10.0KANADI1 isoform 2
SwissprotQ0J2351e-75ROLL9_ORYSJ; Probable transcription factor RL9
TrEMBLB5M4920.0B5M492_MAIZE; Kanadi1
TrEMBLK4JBV80.0K4JBV8_MAIZE; G2-like transcription factor (Fragment)
STRINGGRMZM2G056400_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25583787
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.15e-42G2-like family protein
Publications ? help Back to Top
  1. Candela H,Johnston R,Gerhold A,Foster T,Hake S
    The milkweed pod1 gene encodes a KANADI protein that is required for abaxial/adaxial patterning in maize leaves.
    Plant Cell, 2008. 20(8): p. 2073-87
    [PMID:18757553]