PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G056120_P01
Common NameARF11, pco087136
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ARF
Protein Properties Length: 688aa    MW: 74991.8 Da    PI: 7.2821
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G056120_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.28.5e-25128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       ++ +  s++l+ +d++g +W++++iyr++++r++lt+GW++Fv+ ++L +gD v+F   
  GRMZM2G056120_P01 128 FCKTLTASDTSTHGGFSVPRRAAEDCfppldynQLRP--SQELVAKDLHGAKWKFRHIYRGQPRRHLLTTGWSSFVNKKKLVSGDAVLFL-- 215
                        99****************************9876665..459************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+++v+r+
  GRMZM2G056120_P01 216 RGDDGELRLGVRRA 229
                        3489999***9986 PP
2Auxin_resp921e-30254334182
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                        +a+++++ksvF++ YnPra++se++++ +k++k+l+ ++++G R+ ++  +ed+serr sG+vv vs++dp++Wp+SkWrsL
  GRMZM2G056120_P01 254 VADSLKHKSVFHISYNPRATASEYIIPHHKFLKSLNLPFCIGARINLQCHNEDVSERR-SGMVVHVSEIDPMKWPGSKWRSL 334
                        578899****************************************************.9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.09E-44112266IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-39123229IPR015300DNA-binding pseudobarrel domain
CDDcd100171.02E-22126228No hitNo description
PfamPF023621.1E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.422128230IPR003340B3 DNA binding domain
SMARTSM010192.0E-24128230IPR003340B3 DNA binding domain
PfamPF065071.8E-25255334IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MGIDLNMADG ESQERRPPPA VCRELWHACA GPVVALPRRG SLVVYLPQGH LAAAGGGNVA  60
VDLPPHVACR VADVELCADA ATDEVYARLA LVAEGEAFGR NLRGGGVDGD DDMEDFDVER  120
KSRMLHMFCK TLTASDTSTH GGFSVPRRAA EDCFPPLDYN QLRPSQELVA KDLHGAKWKF  180
RHIYRGQPRR HLLTTGWSSF VNKKKLVSGD AVLFLRGDDG ELRLGVRRAI QLKNEALFDD  240
FSCDSTKRHT LLAVADSLKH KSVFHISYNP RATASEYIIP HHKFLKSLNL PFCIGARINL  300
QCHNEDVSER RSGMVVHVSE IDPMKWPGSK WRSLLVRWED GVECNGQDRV SPWEIEIAGG  360
SVSVAHSVSA SSSKRTKLCP QGNLDVPTMY VTGNGNGCTD SVETGKFPRV LQGQDLMSFR  420
TRHVPSAPQT VEAAKLQSSG ASRFLSNARG CALGGPTSRL AVHNSDFTYQ SVGFNESIGF  480
SEVLQGQEIS RAVPMFQGMM SEACSLKGGY GLHSYMRTPV AVTGLSATTQ ECSLTLSTPP  540
GAQVPSVYPD NIFNRTVVRQ LGLASKFDGG ATNAQQSVPF DRPREIWSKP QHEISDQTKM  600
DHFETRRASA PGDDAAKHGS GGEVVRKTSC RLFGFSLTEK ILPADDDGIK EVTYEPECQN  660
PRMLDLFGYN CSAPSAALPA LCAAPFGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A4e-932035618353Auxin response factor 1
4ldy_B4e-932035618353Auxin response factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.880330.0embryo| leaf| meristem| pericarp| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G056120
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G056120_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664420.0BT066442.1 Zea mays full-length cDNA clone ZM_BFc0182A22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008673159.10.0auxin response factor 11 isoform X5
SwissprotQ5JMM10.0ARFC_ORYSJ; Auxin response factor 3
TrEMBLD9HNT80.0D9HNT8_MAIZE; Auxin response factor
STRINGGRMZM2G056120_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51132756
Representative plantOGRP1291845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-148ARF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Song X, et al.
    Rice RNA-dependent RNA polymerase 6 acts in small RNA biogenesis and spikelet development.
    Plant J., 2012. 71(3): p. 378-89
    [PMID:22443269]