PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055243_P01
Common NameLOC103638717, ZEAMMB73_561822
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family TALE
Protein Properties Length: 316aa    MW: 34522.6 Da    PI: 5.9656
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055243_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.21.2e-072532862154
                        HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        k +yp++e++++L +++gL+ +q+ +WF N+R +
  GRMZM2G055243_P01 253 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 286
                        569*****************************87 PP
2ELK301.1e-10207228122
                ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                        ELKh+L+++Y+ +L+++++E++
  GRMZM2G055243_P01 207 ELKHELKQGYRDKLVDIREEIL 228
                        9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.6E-194185IPR005540KNOX1
PfamPF037901.5E-164481IPR005540KNOX1
SMARTSM012561.6E-2596151IPR005541KNOX2
PfamPF037918.9E-17104150IPR005541KNOX2
SMARTSM011880.0011207228IPR005539ELK domain
PfamPF037893.6E-5207228IPR005539ELK domain
PROSITE profilePS5121310.196207227IPR005539ELK domain
PROSITE profilePS5007111.58227290IPR001356Homeobox domain
SMARTSM003894.9E-10229294IPR001356Homeobox domain
SuperFamilySSF466898.55E-16229294IPR009057Homeodomain-like
CDDcd000864.37E-11230291No hitNo description
Gene3DG3DSA:1.10.10.601.6E-24234292IPR009057Homeodomain-like
PfamPF059203.4E-18247286IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006505anatomycentral spike of ear inflorescence
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009066anatomyanther
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MAFNYHDHAL AMDPAAAAAV GAAANPSFVS GGGMAGGPGW EREKAAIAAH PLYERLLEAH  60
VACLRVATPV DQLPRIDAQI AARPPPMEAA AAAAAAGGAH SGGEELDLFM THYVLLLCSF  120
KEQLQQHVRV HAMEAVMACW ELEQTLQSLT GASPGEGTGA TMSDDEDNQV DSESNMFDGN  180
EGSDGMGFGP LMLTEGERSL VERVRQELKH ELKQGYRDKL VDIREEILRK RRAGKLPGDT  240
ASTLKAWWQA HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHN NSASSSSDKS  300
KRKRNTAGDG NAEPAW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283303RKRNWHNNSASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.87310.0meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055243
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055243_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659775.10.0homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-178KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A3L6DGP40.0A0A3L6DGP4_MAIZE; Homeobox protein knotted-1-like 11
TrEMBLK7VF270.0K7VF27_MAIZE; Knotted related homeobox2
STRINGGRMZM2G055243_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-137KNOTTED1-like homeobox gene 3