PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G055180_P01
Common NameEREB198
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 279aa    MW: 29881.5 Da    PI: 5.1827
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G055180_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.93.4e-20132182255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+GVr+++ +g+++AeIrdp +ng  +r++lg+++tae+Aa a+++a+ +++g
  GRMZM2G055180_P01 132 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTYDTAEDAALAYDRAAYRMRG 182
                        8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.25E-29131190No hitNo description
Gene3DG3DSA:3.30.730.104.3E-32131190IPR001471AP2/ERF domain
SMARTSM003802.2E-38132196IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23132192IPR016177DNA-binding domain
PfamPF008472.2E-14132182IPR001471AP2/ERF domain
PROSITE profilePS5103224.25132190IPR001471AP2/ERF domain
PRINTSPR003679.2E-11133144IPR001471AP2/ERF domain
PRINTSPR003679.2E-11156172IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MLLNPASMLD TIRQHLLEEP PAAADESFGI LVADQWSDSL PFRTDDADDM VVFGALQDAF  60
AYGWLPDGSF AHVKPEPVRS PDSYYSSSYD GSCFGGLPYP EQPLTPGSEG EAAATPSPRR  120
EEAAAAVARG KHYRGVRQRP WGKFAAEIRD PAKNGARVWL GTYDTAEDAA LAYDRAAYRM  180
RGSRALLNFP LRIGSEIAAA AAGDKRPLAL PEPATSSDSS SSSTGGSPKR RKRGEAAAAN  240
MAMALVPPPS QLSRPAQPWF PAAPVEQAAM PPRVEQLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-39128195168ATERF1
3gcc_A2e-39128195168ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.204700.0meristem| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G055180
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G055180_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275180.0KJ727518.1 Zea mays clone pUT5377 AP2-EREBP transcription factor (EREB198) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152050.11e-163ethylene-responsive transcription factor 2
TrEMBLA0A060D6Q90.0A0A060D6Q9_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G055180_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-33ethylene responsive element binding factor 1