PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G055135_P05 | ||||||||
Common Name | TIDP2780, ZEAMMB73_950191 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | LSD | ||||||||
Protein Properties | Length: 105aa MW: 10891.8 Da PI: 7.5743 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 43.3 | 5.9e-14 | 27 | 51 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gCr+lL+YP+GA+sV+Ca+C tV GRMZM2G055135_P05 27 CTGCRNLLMYPAGATSVCCAVCSTV 51 9**********************99 PP | |||||||
2 | zf-LSD1 | 47.5 | 2.8e-15 | 66 | 90 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV GRMZM2G055135_P05 66 CGGCHTLLMYIRGATSVQCSCCHTV 90 ************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 3.5E-13 | 24 | 54 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.6E-11 | 27 | 51 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 4.9E-15 | 63 | 92 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.7E-13 | 66 | 90 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 105 aa Download sequence Send to blast |
MPVPLAPYPA PPAPFTPPNG AQSQLVCTGC RNLLMYPAGA TSVCCAVCST VTAVPAPGTE 60 MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLAMEERWKS LTGMS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.94261 | 7e-94 | aerial organ| ear| endosperm| glume| meristem| pollen| tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G055135 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G055135_P05 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU972982 | 1e-159 | EU972982.1 Zea mays clone 391080 LOL1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941225.1 | 1e-54 | protein LSD1 isoform X2 | ||||
Refseq | XP_010941226.1 | 1e-54 | protein LSD1 isoform X2 | ||||
Swissprot | Q0J7V9 | 2e-51 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | K7TWY2 | 3e-61 | K7TWY2_MAIZE; LOL1 | ||||
STRING | GRMZM2G055135_P07 | 2e-61 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 3e-32 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G055135_P05 |
Publications ? help Back to Top | |||
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