PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G055024_P01 | ||||||||
Common Name | ZEAMMB73_060356 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | TCP | ||||||||
Protein Properties | Length: 420aa MW: 45495.6 Da PI: 11.3897 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.3 | 2e-32 | 147 | 223 | 3 | 66 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............s 66 ++d hski T++g RdRR+Rls+ +a++fF+Lqd+LGfdk+skt++WLl q+kpai+ l++ GRMZM2G055024_P01 147 FRTDWHSKIRTAQGVRDRRMRLSVGVAREFFALQDRLGFDKASKTVNWLLAQSKPAIDRLNRArlgserqfvappnR 223 689***********************************************************966666655555442 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 32.359 | 148 | 206 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.4E-28 | 148 | 216 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MATMHEPAAA AGPIRTHPIS RFLGAPWGCG GCNGCATTEP TRVGGLIRQG LDHDGDGRQA 60 SARRLCARKN RVSVAAVVPP LTPPSPSSPL PDPDNHTAQI RIHLVQHDRG YRISASEGER 120 ELPSNGSPPV VDDAGVQAAT VLRKRPFRTD WHSKIRTAQG VRDRRMRLSV GVAREFFALQ 180 DRLGFDKASK TVNWLLAQSK PAIDRLNRAR LGSERQFVAP PNRTRPEQFI APHGLSKRAV 240 SAEEEVAGVA ARKGCVRQTG GDADETKKVT FVEVGGDVPL KLSRRNSLAA HVPVTRSRRN 300 SLGADVLVRQ SSRNSLCAEA QDCELRSQVT CSPVVAKPRG KSVQAGSVEV GAVVPLRRSR 360 RNSLRAAESE EVQVVVFVDR KRKCKNQEND KGVALSAQVG ASSRVTRRSS HALSSLKPRE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.39804 | 1e-128 | tassel |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G055024 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G055024_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU961498 | 1e-126 | EU961498.1 Zea mays clone 235951 teosinte branched1 protein mRNA, complete cds. | |||
GenBank | KJ727762 | 1e-126 | KJ727762.1 Zea mays clone pUT5707 TCP transcription factor (TCP11) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1D6PNG7 | 1e-160 | A0A1D6PNG7_MAIZE; Uncharacterized protein | ||||
TrEMBL | A0A3L6F1L7 | 1e-160 | A0A3L6F1L7_MAIZE; Transcription factor TCP18 | ||||
STRING | GRMZM2G055024_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4052 | 31 | 72 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 4e-23 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G055024_P01 |