PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054795_P02 | ||||||||
Common Name | LOC100193442 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | YABBY | ||||||||
Protein Properties | Length: 246aa MW: 26551.2 Da PI: 7.1636 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 199.9 | 1.1e-61 | 23 | 211 | 7 | 170 |
YABBY 7 seqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaa.eshldeslkee......................lleel 75 eq+Cyv+C++C+tilav vP +slf++vtvrCGhC++ll vnl+ aa +++l +++ + GRMZM2G054795_P02 23 QEQICYVHCSYCDTILAVGVPCSSLFQTVTVRCGHCSNLLYVNLRALLLPAAAaNNQLPPFGQPLlsptsphgllapslpgaeppsaCVSGV 114 79******************************************9988655540555544444448889999**999988877666634444 PP YABBY 76 kveeenlksnvekeesastsvssekl.......senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159 + ++++ n++++++ s+ + +e +++pr+ v+r ekrqrvPsaynrfik+eiqrikasnPdi+hreafsaaakn GRMZM2G054795_P02 115 TSINNTCGGNTTTSSAMSS------MapppakhALQEAQQLPRTAAsVNRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKN 200 4444444444333333333......2333333377788889998766********************************************* PP YABBY 160 WahfPkihfgl 170 WahfP+ihfgl GRMZM2G054795_P02 201 WAHFPHIHFGL 211 *********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.3E-68 | 22 | 211 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.49E-7 | 155 | 204 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 2.6E-4 | 163 | 203 | IPR009071 | High mobility group box domain |
CDD | cd00084 | 7.07E-5 | 165 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MMSSAPEETL FNLDQQQPPP AEQEQICYVH CSYCDTILAV GVPCSSLFQT VTVRCGHCSN 60 LLYVNLRALL LPAAAANNQL PPFGQPLLSP TSPHGLLAPS LPGAEPPSAC VSGVTSINNT 120 CGGNTTTSSA MSSMAPPPAK HALQEAQQLP RTAASVNRTS EKRQRVPSAY NRFIKDEIQR 180 IKASNPDITH REAFSAAAKN WAHFPHIHFG LMPDQGLKKN PMQNQEGAEC MLFMDGLYAS 240 MGFSPF |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.23998 | 0.0 | ear| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054795 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf primordia, young leaves, floret meristems, floral organ primordia, stamens and carpels. Does not show polar expression pattern. {ECO:0000269|PubMed:17216490, ECO:0000269|PubMed:17351053}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000250}. | |||||
UniProt | May be involved in leaf cell growth and differentiation, rather than abaxial cell fate determination. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054795_P02 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by WOX3. {ECO:0000269|PubMed:17351053}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062243 | 0.0 | BT062243.1 Zea mays full-length cDNA clone ZM_BFb0231O11 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008667172.1 | 0.0 | putative YABBY domain transcription factor family protein isoform X1 | ||||
Swissprot | Q01JG2 | 1e-105 | YAB5_ORYSI; Protein YABBY 5 | ||||
Swissprot | Q0JBF0 | 1e-105 | YAB5_ORYSJ; Protein YABBY 5 | ||||
TrEMBL | C0HIT7 | 0.0 | C0HIT7_MAIZE; C2C2-YABBY transcription factor | ||||
STRING | GRMZM2G054795_P01 | 1e-168 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-41 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054795_P02 |
Entrez Gene | 100193442 |
Publications ? help Back to Top | |||
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