PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054615_P02
Common NameZEAMMB73_697171, Zm.5310
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 329aa    MW: 34843.3 Da    PI: 6.2392
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054615_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA60.62e-19249283135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  GRMZM2G054615_P02 249 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 283
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.47E-14243305No hitNo description
SMARTSM004014.9E-19243297IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.374243279IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.4E-15247281IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.29E-15248305No hitNo description
PfamPF003202.1E-17249283IPR000679Zinc finger, GATA-type
PROSITE patternPS003440249274IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MLHQTTLIPP SVSAASSSPF LHAATTAPAP GGGSCTPAFL RGASAMPSYA HHRSSPLDDG  60
RMDALKCNNS VLPEETTADA AGAFVEKDGF SVEDLLDLEE FAEPDKDVAE REDDDAPPAA  120
AAAAERSKAD SQPSSVVKYD LPPLLPPPPE MVDLPSHDVE ELEWVSRIMD DSLSELQPQA  180
QPKPAAAVVA SSAARPPLAQ QRRPFAHDGT YRAVAAAPPQ AGPQRTPTIC ALSTEAMIPV  240
KAKPSDRRCS HCGVQKTPQW RAGPEGAKTL CNACGVRYKS GRLLPEYRPA CSPTFVSSIH  300
SNSHRKVLEM RRKKEGGMVA TAAPAVASF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.53100.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054615
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054615_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554320.0EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
GenBankKJ7278510.0KJ727851.1 Zea mays clone pUT5896 C2C2-GATA transcription factor (GATA6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142921.21e-135uncharacterized protein LOC100275354
TrEMBLK7TMG01e-134K7TMG0_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G054615_P011e-135(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-41GATA transcription factor 5