PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054615_P01
Common NameGATA6, ZEAMMB73_697171, Zm.5310
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 438aa    MW: 46168 Da    PI: 9.1092
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054615_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA603e-19358392135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp+g ktLCnaCG++y++ +l
  GRMZM2G054615_P01 358 CSHCGVQKTPQWRAGPEGAKTLCNACGVRYKSGRL 392
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-14350413No hitNo description
SMARTSM004011.0E-18352406IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.044352388IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.0E-15356390IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.39E-14357414No hitNo description
PROSITE patternPS003440358383IPR000679Zinc finger, GATA-type
PfamPF003203.1E-17358392IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MLHQTTLIPP SVSAASSSPF LHAATTAPAP GGGSCTPAFL RGASAMPSYA HHRSSPLDDG  60
RMDALKCNNS VLPEETTADA AGAFVEKDGF SVEDLLDLEE FAEPDKDVAE REDDDAPPAA  120
AAAAERSKAD SQPSSVVKYD LPPLLPPPPE MVDLPSHDVE ELEWVSRIMD DSLSELQPQA  180
QPKPAAAVVA SSAARPPLAQ QRRPFAHDGT YRAVAAAPPQ AGPQRTPTIC ALSTEAMIPV  240
KAKRSKRSRG PGWSRPGASF LPDSASSSST TTTSSCSSSG SISPFLRLDS SPFGGGLELG  300
EGLFSYGHLL PRPPSKKSKH GGKGSKHRPK KRGRKPKHLP PPHPSAAASQ PGPSDRRCSH  360
CGVQKTPQWR AGPEGAKTLC NACGVRYKSG RLLPEYRPAC SPTFVSSIHS NSHRKVLEMR  420
RKKEGGMVAT AAPAVASF
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.53100.0ear| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054615
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054615_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278510.0KJ727851.1 Zea mays clone pUT5896 C2C2-GATA transcription factor (GATA6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001142921.20.0uncharacterized protein LOC100275354
TrEMBLK7TMG00.0K7TMG0_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G054615_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-39GATA transcription factor 5