PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G054277_P02
Common NameLOC100381893
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NAC
Protein Properties Length: 157aa    MW: 17612.3 Da    PI: 11.4206
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G054277_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.65.1e-36111381128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrFhPtdeelvv yL++k+ +++l++  vi+ v d+ +++Pwd      a+e e yfFs r+  + t  r++r + sgyWkatgk+k+
  GRMZM2G054277_P02  11 LPPGFRFHPTDEELVVLYLRRKALARPLPA-AVIPVVhDVARLDPWDVT---GASEGEGYFFSLRRAPA-T-GRRRR-AGSGYWKATGKEKP 95 
                        79****************************.8899998**********7...3466799****997754.3.46666.589*********** PP

                NAM  92 vlsk.....kgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        v+ +     ++ lvg+k+ L+f++    p +++t Wvmheyrl
  GRMZM2G054277_P02  96 VFLQcggeqRQLLVGVKTALAFHRRePPPPSSRTGWVMHEYRL 138
                        ***9876544445**********762455678*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-408143IPR003441NAC domain
PROSITE profilePS5100540.06811157IPR003441NAC domain
PfamPF023651.5E-2412138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MDRPAQAPTQ LPPGFRFHPT DEELVVLYLR RKALARPLPA AVIPVVHDVA RLDPWDVTGA  60
SEGEGYFFSL RRAPATGRRR RAGSGYWKAT GKEKPVFLQC GGEQRQLLVG VKTALAFHRR  120
EPPPPSSRTG WVMHEYRLAV PRGVADQRKK NARHLTS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-2721386140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.172580.0endosperm| ovary
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G054277
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}.
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G054277_P02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0625330.0BT062533.1 Zea mays full-length cDNA clone ZM_BFb0310M02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001168145.11e-111uncharacterized protein LOC100381893 isoform 2
SwissprotO227987e-40NAC41_ARATH; NAC domain-containing protein 41
SwissprotQ9FY935e-40NAC83_ARATH; NAC domain-containing protein 83
TrEMBLC0P2L41e-110C0P2L4_MAIZE; Uncharacterized protein
STRINGGRMZM2G054277_P011e-108(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.18e-27NAC domain containing protein 83
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]