PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054252_P02 | ||||||||
Common Name | pco113991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 24712.3 Da PI: 11.1472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.5 | 8.3e-30 | 23 | 169 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk....kvka.eekewyfFskrdkkyatgk...rknratksgyW 83 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ + d+y+ +Pwd + + ++ +e e yfF+ r + +++ +ra++ g+W GRMZM2G054252_P02 23 LPPGFRFRPTDEELVVQYLRRKAIGVPLPA-AVIPVFrDLYSRDPWDVVAvsapA-DTrSEGEKYFFAVRPASGGKSSgagTGSRAAAGGRW 112 79***************************9.7899888**********7333331.22234488****99887665333337789999**** PP NAM 84 katgkdkevlsk.....kgelvglkktLvfykgrapkge.......ktdWvmheyrl 128 k +gk+k+v+ ++ lvg+k+ ++f r++k+ kt Wvmheyrl GRMZM2G054252_P02 113 KPSGKEKPVVLPrpcggGSLLVGVKRAMTFVPRRRKKTAalpsaalKTGWVMHEYRL 169 **********99899877777**********443333333555666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.71E-41 | 21 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.354 | 23 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-20 | 24 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MSAERAPVLV RHGGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAIGVPL PAAVIPVFRD 60 LYSRDPWDVV AVSAPADTRS EGEKYFFAVR PASGGKSSGA GTGSRAAAGG RWKPSGKEKP 120 VVLPRPCGGG SLLVGVKRAM TFVPRRRKKT AALPSAALKT GWVMHEYRLA APLHKNGCSL 180 AQAQGEWVVC RVFQKGGNRP RRRQREASPP PSASSSCVTD ASSSDLDEVS S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-26 | 23 | 195 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-26 | 23 | 195 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-26 | 23 | 195 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-26 | 23 | 195 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 9e-26 | 23 | 195 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 8e-26 | 23 | 195 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 8e-26 | 23 | 195 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 143 | 147 | PRRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9384 | 0.0 | aerial organ| glume| leaf| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054252 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054252_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955506 | 0.0 | EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674071.1 | 1e-165 | uncharacterized protein LOC100281072 isoform X1 | ||||
TrEMBL | A0A1D6KKC5 | 1e-164 | A0A1D6KKC5_MAIZE; NAC domain-containing protein 68 | ||||
STRING | GRMZM2G054252_P02 | 1e-165 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11818 | 31 | 40 | Representative plant | OGRP14562 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 6e-31 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054252_P02 |
Entrez Gene | 100281072 |
Publications ? help Back to Top | |||
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