PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054252_P01 | ||||||||
Common Name | pco113991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | NAC | ||||||||
Protein Properties | Length: 230aa MW: 24641.2 Da PI: 11.1472 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.6 | 7.5e-30 | 23 | 168 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpk..kvka.eekewyfFskrdkkyatgk...rknratksgyWka 85 lppGfrF+Ptdeelvv+yL++k+ g +l++ vi+ + d+y+ +Pwd + + ++ +e e yfF+ r + +++ +ra++ g+Wk GRMZM2G054252_P01 23 LPPGFRFRPTDEELVVQYLRRKAIGVPLPA-AVIPVFrDLYSRDPWDVVAvsAPDTrSEGEKYFFAVRPASGGKSSgagTGSRAAAGGRWKP 113 79***************************9.7899888**********73232222234488****99887665333337789999****** PP NAM 86 tgkdkevlsk.....kgelvglkktLvfykgrapkge.......ktdWvmheyrl 128 +gk+k+v+ ++ lvg+k+ ++f r++k+ kt Wvmheyrl GRMZM2G054252_P01 114 SGKEKPVVLPrpcggGSLLVGVKRAMTFVPRRRKKTAalpsaalKTGWVMHEYRL 168 ********99899877777**********443333333555666*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-41 | 21 | 194 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 42.408 | 23 | 194 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-20 | 24 | 168 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MSAERAPVLV RHGGGGVEAL RQLPPGFRFR PTDEELVVQY LRRKAIGVPL PAAVIPVFRD 60 LYSRDPWDVV AVSAPDTRSE GEKYFFAVRP ASGGKSSGAG TGSRAAAGGR WKPSGKEKPV 120 VLPRPCGGGS LLVGVKRAMT FVPRRRKKTA ALPSAALKTG WVMHEYRLAA PLHKNGCSLA 180 QAQGEWVVCR VFQKGGNRPR RRQREASPPP SASSSCVTDA SSSDLDEVSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-26 | 23 | 194 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-26 | 23 | 194 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-26 | 23 | 194 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-26 | 23 | 194 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
4dul_A | 4e-26 | 23 | 194 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-26 | 23 | 194 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 146 | PRRRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.9384 | 0.0 | aerial organ| glume| leaf| meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054252 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054252_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955506 | 0.0 | EU955506.1 Zea mays clone 1534835 NAC domain-containing protein 68 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008674071.1 | 1e-155 | uncharacterized protein LOC100281072 isoform X1 | ||||
TrEMBL | A0A1D6KKC4 | 1e-163 | A0A1D6KKC4_MAIZE; NAC domain-containing protein 68 | ||||
STRING | GRMZM2G054252_P02 | 1e-154 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 5e-30 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054252_P01 |