PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G054125_P01 | ||||||||
Common Name | ZEAMMB73_567891, Zm.149431 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 24730.2 Da PI: 9.9838 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.3 | 3.1e-33 | 137 | 195 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+ GRMZM2G054125_P01 137 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEGVVVTTYEGTHTHP 195 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.0E-35 | 122 | 195 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.45E-30 | 129 | 196 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.228 | 132 | 197 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-39 | 137 | 196 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.3E-27 | 138 | 195 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000122 | Biological Process | negative regulation of transcription from RNA polymerase II promoter | ||||
GO:0010055 | Biological Process | atrichoblast differentiation | ||||
GO:0032107 | Biological Process | regulation of response to nutrient levels | ||||
GO:0043620 | Biological Process | regulation of DNA-templated transcription in response to stress | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MENYHMLFGR PSTQPSSAAT SNSYNFMLPT AGSTSGGGGG LRDHDRGGGQ HSGHAGGVPS 60 SSSFFAEPSN TSSKDSGAAA SSPPPAAGIG RGEEPAAGTP PAAAEVDGRL QAGKRKGEKK 120 ERRPRFAFQT RSQVDILDDG YRWRKYGQKA VKNNKFPRSY YRCTHQGCNV KKQVQRLSRD 180 EGVVVTTYEG THTHPIEKSN DNFEHILTQM QIYSGMGSTF SSSSHNMFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-27 | 128 | 196 | 8 | 76 | Probable WRKY transcription factor 4 |
2lex_A | 4e-27 | 128 | 196 | 8 | 76 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G054125 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00506 | DAP | Transfer from AT5G13080 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G054125_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ728200 | 1e-161 | KJ728200.1 Zea mays clone pUT6475 WRKY transcription factor (WRKY108) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008678126.1 | 1e-171 | probable WRKY transcription factor 24 | ||||
TrEMBL | K7TZX4 | 1e-170 | K7TZX4_MAIZE; Putative WRKY DNA-binding domain superfamily protein | ||||
STRING | GRMZM2G054125_P01 | 1e-170 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1100 | 38 | 133 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13080.1 | 1e-55 | WRKY DNA-binding protein 75 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G054125_P01 |
Entrez Gene | 103652912 |