PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G053298_P01
Common NameLOC103633146, Zm.43365
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family Nin-like
Protein Properties Length: 851aa    MW: 93385.8 Da    PI: 6.7208
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G053298_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK89.52.6e-28532583152
             RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                        aek++sl+ l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  GRMZM2G053298_P01 532 AEKTVSLQILRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 583
                        5899**********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.734522603IPR003035RWP-RK domain
PfamPF020424.6E-25535583IPR003035RWP-RK domain
SuperFamilySSF542771.21E-22742840No hitNo description
Gene3DG3DSA:3.10.20.2405.7E-26750834No hitNo description
PROSITE profilePS5174522.673753836IPR000270PB1 domain
SMARTSM006662.5E-22753836IPR000270PB1 domain
CDDcd064074.38E-40754834No hitNo description
PfamPF005641.2E-16754834IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MEEGGDPQLP SISAPRTTSE GAGGVDLDLL EQLLSGDNGW LEVVSRSPNS VAFPPLSAFF  60
SADATATTVT TAAPAANASW WIQTGGASPS SVEERFSQAL SYIRDTQSDG DVLVQLWVPV  120
NRDDGKLVLT TSEQPFTLDH RSDSLLRFRE VSTKYQFSAD VKSGDSPGLP GRVFIGRLPE  180
WSPDIRYFTS YEYPRVRDAQ YLDVHGTMGL PVFEKGSYNC LGVIELIMTR QKINFTSELN  240
TICSALQAVN LRSTEVSSIP RIKFSTASYK DALPEILEVL RAACLTHKLP LAQTWVTCAQ  300
QGKRGSRHSD ENYRYCISTI DEACFVNEAE MRGFHEACSE HHLLRGEGVA GKAFTTNQPC  360
FLPDIGSSTK LEYSLSHHAK IFKLKGAVAI RLRCTRTGTA DFVLEFFLPT DCEALEEQKS  420
VLDSLSGTMR SVCQTLRVVT DREMEDETVL EMNELNSFTP HGKDKVELSF GCNSADRRGE  480
ASWTSLAGTS QQESELAALR MHGMFSPGGQ GPSLSGVQAT AEGSKAKRRT KAEKTVSLQI  540
LRQYFAGSLK DAARSLGVCP TTLKRICRQH GITRWPSRKI KKVDHSLRKL QQIIDSVHGA  600
ETAFQLNTLY KDITNTSISS DNNLSGSVTV PPTNQSNLTD VNKHQPHKSS SNVPSTSHSH  660
SSCSHSSESS PSCSGGATKH AQQGIIDQMK SENPVKDSSI QTLQTENTSL FEHFSVNETP  720
IDLLQDVTEK ANGGHHSSRS PSSPNPKQNT DANMRVKATF GSEKVRFRLN PECNFQELKH  780
EIAKRLSIVD TNPLVLKYLD DDSEWVLMTC DADLQECLHV YKLAGIQTIK ISVHLAVSPA  840
TRVTTGHTGL S
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.268190.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G053298
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00154DAPTransfer from AT1G20640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G053298_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9712710.0EU971271.1 Zea mays clone 360961 NIN-like protein 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008653047.10.0protein NLP1 isoform X2
TrEMBLA0A1D6IB260.0A0A1D6IB26_MAIZE; Protein NLP2
STRINGGRMZM2G053298_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Representative plantOGRP2991697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein