PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G053298_P01 | ||||||||
Common Name | LOC103633146, Zm.43365 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | Nin-like | ||||||||
Protein Properties | Length: 851aa MW: 93385.8 Da PI: 6.7208 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.5 | 2.6e-28 | 532 | 583 | 1 | 52 |
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek++sl+ l++yF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++ GRMZM2G053298_P01 532 AEKTVSLQILRQYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 583 5899**********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.734 | 522 | 603 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.6E-25 | 535 | 583 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 1.21E-22 | 742 | 840 | No hit | No description |
Gene3D | G3DSA:3.10.20.240 | 5.7E-26 | 750 | 834 | No hit | No description |
PROSITE profile | PS51745 | 22.673 | 753 | 836 | IPR000270 | PB1 domain |
SMART | SM00666 | 2.5E-22 | 753 | 836 | IPR000270 | PB1 domain |
CDD | cd06407 | 4.38E-40 | 754 | 834 | No hit | No description |
Pfam | PF00564 | 1.2E-16 | 754 | 834 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 851 aa Download sequence Send to blast |
MEEGGDPQLP SISAPRTTSE GAGGVDLDLL EQLLSGDNGW LEVVSRSPNS VAFPPLSAFF 60 SADATATTVT TAAPAANASW WIQTGGASPS SVEERFSQAL SYIRDTQSDG DVLVQLWVPV 120 NRDDGKLVLT TSEQPFTLDH RSDSLLRFRE VSTKYQFSAD VKSGDSPGLP GRVFIGRLPE 180 WSPDIRYFTS YEYPRVRDAQ YLDVHGTMGL PVFEKGSYNC LGVIELIMTR QKINFTSELN 240 TICSALQAVN LRSTEVSSIP RIKFSTASYK DALPEILEVL RAACLTHKLP LAQTWVTCAQ 300 QGKRGSRHSD ENYRYCISTI DEACFVNEAE MRGFHEACSE HHLLRGEGVA GKAFTTNQPC 360 FLPDIGSSTK LEYSLSHHAK IFKLKGAVAI RLRCTRTGTA DFVLEFFLPT DCEALEEQKS 420 VLDSLSGTMR SVCQTLRVVT DREMEDETVL EMNELNSFTP HGKDKVELSF GCNSADRRGE 480 ASWTSLAGTS QQESELAALR MHGMFSPGGQ GPSLSGVQAT AEGSKAKRRT KAEKTVSLQI 540 LRQYFAGSLK DAARSLGVCP TTLKRICRQH GITRWPSRKI KKVDHSLRKL QQIIDSVHGA 600 ETAFQLNTLY KDITNTSISS DNNLSGSVTV PPTNQSNLTD VNKHQPHKSS SNVPSTSHSH 660 SSCSHSSESS PSCSGGATKH AQQGIIDQMK SENPVKDSSI QTLQTENTSL FEHFSVNETP 720 IDLLQDVTEK ANGGHHSSRS PSSPNPKQNT DANMRVKATF GSEKVRFRLN PECNFQELKH 780 EIAKRLSIVD TNPLVLKYLD DDSEWVLMTC DADLQECLHV YKLAGIQTIK ISVHLAVSPA 840 TRVTTGHTGL S |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.26819 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G053298 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00154 | DAP | Transfer from AT1G20640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G053298_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU971271 | 0.0 | EU971271.1 Zea mays clone 360961 NIN-like protein 1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008653047.1 | 0.0 | protein NLP1 isoform X2 | ||||
TrEMBL | A0A1D6IB26 | 0.0 | A0A1D6IB26_MAIZE; Protein NLP2 | ||||
STRING | GRMZM2G053298_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5554 | 38 | 52 | Representative plant | OGRP299 | 16 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G20640.2 | 0.0 | Nin-like family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G053298_P01 |
Entrez Gene | 103633146 |