PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052667_P02
Common Nameumc1393
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 310aa    MW: 32945.4 Da    PI: 9.0409
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052667_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.3e-202271255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       +y+G+r+++ +g+W+AeIrdp+   k  r++lg++ taeeAa+a++a ++k++g
  GRMZM2G052667_P02 22 QYRGIRQRP-WGKWAAEIRDPN---KGVRVWLGTYNTAEEAARAYDAEARKIRG 71
                       69*******.**********93...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.9472279IPR001471AP2/ERF domain
CDDcd000182.53E-302281No hitNo description
SMARTSM003805.1E-362285IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-222280IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-322280IPR001471AP2/ERF domain
PfamPF008471.9E-122371IPR001471AP2/ERF domain
PRINTSPR003671.8E-112334IPR001471AP2/ERF domain
PRINTSPR003671.8E-114561IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTPPPKDVQG DRAVKKRGRK NQYRGIRQRP WGKWAAEIRD PNKGVRVWLG TYNTAEEAAR  60
AYDAEARKIR GKKAKVNFPD DATGTRHRPT TDEIFNNLKN DDNNNNDDLF AMFAFGDNKK  120
KVPAAKPAAA EGGSGSGSFL VPAPAVAVVP GNKRRSSATN TMLSVSDDQR SNSYGSGSSD  180
LVGSWSWDDD AAAAAMTSDY TSSVFAPDNA VLPAASYTQG GAPKRMRSSY GGAPPSLAHD  240
AAMPGFGLDK VSYHHYQALP PYYVGSSNAS VGNLGLLQQA DDAPAPQDGA SAGDIWSLDE  300
LLMLAAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-202179160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-202179463ATERF1
3gcc_A9e-202179463ATERF1
5wx9_A3e-19981374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.831850.0ear| embryo| endosperm| glume| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052667
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052667_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9454030.0EU945403.1 Zea mays clone 265278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150673.20.0uncharacterized protein LOC100284306
TrEMBLA0A1D6I4Y70.0A0A1D6I4Y7_MAIZE; Ethylene response factor
STRINGGRMZM2G052667_P010.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.12e-25ethylene-responsive element binding protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]