PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052667_P01
Common Nameumc1393
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 418aa    MW: 44156.7 Da    PI: 5.1719
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052667_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.91.5e-19130179255
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        +y+G+r+++ +g+W+AeIrdp+   k  r++lg++ taeeAa+a++a ++k++g
  GRMZM2G052667_P01 130 QYRGIRQRP-WGKWAAEIRDPN---KGVRVWLGTYNTAEEAARAYDAEARKIRG 179
                        69*******.**********93...25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.947130187IPR001471AP2/ERF domain
SMARTSM003805.1E-36130193IPR001471AP2/ERF domain
CDDcd000181.21E-30130189No hitNo description
SuperFamilySSF541712.29E-22130188IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.1E-32130188IPR001471AP2/ERF domain
PRINTSPR003672.9E-11131142IPR001471AP2/ERF domain
PfamPF008473.0E-12131179IPR001471AP2/ERF domain
PRINTSPR003672.9E-11153169IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007633developmental stageendosperm development stage
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MCGGAILSGF IPPSGVAAAA AAAKKQQQQQ QRCRVTADLL WPGPGSKGAP QDKEEDFEAD  60
FREFERGLGE DDVDSAGEGG DPEVQELPPP EPTRFAFATA AKAAVDGVMT PPPKDVQGDR  120
AVKKRGRKNQ YRGIRQRPWG KWAAEIRDPN KGVRVWLGTY NTAEEAARAY DAEARKIRGK  180
KAKVNFPDDA TGTRHRPTTD EIFNNLKNDD NNNNDDLFAM FAFGDNKKKV PAAKPAAAEG  240
GSGSGSFLVP APAVAVVPGN KRRSSATNTM LSVSDDQRSN SYGSGSSDLV GSWSWDDDAA  300
AAAMTSDYTS SVFAPDNAVL PAASYTQGGA PKRMRSSYGG APPSLAHDAA MPGFGLDKVS  360
YHHYQALPPY YVGSSNASVG NLGLLQQADD APAPQDGASA GDIWSLDELL MLAAAGAY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-19129187160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A4e-19130187563ATERF1
3gcc_A4e-19130187563ATERF1
5wx9_A1e-181301891474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.831850.0ear| embryo| endosperm| glume| meristem| ovary| root| shoot| tassel
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052667
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052667_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9454030.0EU945403.1 Zea mays clone 265278 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001150673.20.0uncharacterized protein LOC100284306
TrEMBLA0A1D6I4Y70.0A0A1D6I4Y7_MAIZE; Ethylene response factor
STRINGGRMZM2G052667_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.19e-25ERF family protein
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]