PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G052616_P01 | ||||||||
Common Name | GATA27, LOC100273183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GATA | ||||||||
Protein Properties | Length: 127aa MW: 13842.7 Da PI: 10.4075 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.9 | 7.9e-20 | 22 | 56 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+ C++t+Tp+WR+gp g+++LCnaCG++yrkk++ GRMZM2G052616_P01 22 CVECRATTTPMWRSGPTGPRSLCNACGIRYRKKRR 56 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 13.257 | 16 | 52 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.6E-16 | 16 | 68 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.03E-14 | 18 | 59 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.8E-16 | 20 | 57 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 4.54E-13 | 21 | 57 | No hit | No description |
Pfam | PF00320 | 1.5E-17 | 22 | 56 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 22 | 47 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MGSADRSKID GIVVPEKGAR SCVECRATTT PMWRSGPTGP RSLCNACGIR YRKKRRQELG 60 LEHNKQQQQQ QNNGEAKTGV KDSSSNSSSG SSNFHVVQKR RLLMEVEEAA LLLMTLSSSP 120 ASTLLHG |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85825 | 0.0 | endosperm| meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G052616 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G052616_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT040389 | 0.0 | BT040389.1 Zea mays full-length cDNA clone ZM_BFc0088I05 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001141100.1 | 3e-90 | uncharacterized protein LOC100273183 | ||||
TrEMBL | B4FTF1 | 8e-89 | B4FTF1_MAIZE; C2C2-GATA transcription factor | ||||
STRING | GRMZM2G052616_P01 | 1e-89 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6721 | 28 | 54 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26930.1 | 9e-19 | GATA transcription factor 23 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G052616_P01 |
Entrez Gene | 100273183 |