PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G052606_P01 | ||||||||
Common Name | LOC100857076, ZEAMMB73_654485 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 405aa MW: 43388.1 Da PI: 6.8344 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.2 | 2.4e-15 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv + + G g+W+ +ar g+ R++k+c++rw +yl GRMZM2G052606_P01 23 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 70 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.2 | 1.4e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++ GRMZM2G052606_P01 76 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 119 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.149 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.45E-28 | 21 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-10 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.1E-13 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-22 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.25E-9 | 26 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.339 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 9.6E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.9E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-25 | 78 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.45E-11 | 78 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:1901348 | Biological Process | positive regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MRKPECPAAN SSNAGAAAAK LRKGLWSPEE DERLVAYMLR SGQGSWSDVA RNAGLQRCGK 60 SCRLRWINYL RPDLKRGAFS PQEEELIVSL HAILGNRWSQ IAARLPGRTD NEIKNFWNST 120 IKKRLKNSSA ASSPAATDCA SPEPNNKVAA AGSCPDLSVL DHQDGGHHHA MTTTTAGLWM 180 VDSSSSCTSS TSPMHQFQRP TTTMAAAVAS GSYGGLVPFP DQVRGVVADT GGFFHGHAAP 240 AFKHQVAALH GGGYYYGSAP RHHGMTTTTT TVALEGSGGC FISGEGMLGV PPLLLEPMSA 300 ALEQDQGQTL MASSGNNNPK NNSSSNTTDT TTTTTLSNNE SNVTDTTTKD NTTNTISQVN 360 SGSNNVYWEG ARQQYMSRNV MHGEWDLEEL MKDVSSLPFL DFQVE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-28 | 20 | 125 | 24 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G052606 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00599 | PBM | Transfer from AT5G12870 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G052606_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN634085 | 0.0 | JN634085.1 Zea mays secondary wall MYB46 transcription factor mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241859.1 | 0.0 | uncharacterized protein LOC100857076 | ||||
Refseq | XP_008662308.1 | 0.0 | secondary wall MYB46 transcription factor isoform X1 | ||||
TrEMBL | G3M8E6 | 0.0 | G3M8E6_MAIZE; Secondary wall MYB46 transcription factor | ||||
STRING | GRMZM2G052606_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9821 | 35 | 45 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12870.1 | 9e-66 | myb domain protein 46 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G052606_P01 |
Entrez Gene | 100857076 |
Publications ? help Back to Top | |||
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