PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052606_P01
Common NameLOC100857076, ZEAMMB73_654485
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 405aa    MW: 43388.1 Da    PI: 6.8344
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052606_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.4e-152370148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+lv +  + G g+W+ +ar  g+ R++k+c++rw +yl
  GRMZM2G052606_P01 23 KGLWSPEEDERLVAYMLRSGQGSWSDVARNAGLQRCGKSCRLRWINYL 70
                       678*******************************************97 PP

2Myb_DNA-binding52.21.4e-1676119146
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                        rg+++++E+el+v +++ lG++ W+ Ia++++ gRt++++k++w++
  GRMZM2G052606_P01  76 RGAFSPQEEELIVSLHAILGNR-WSQIAARLP-GRTDNEIKNFWNS 119
                        89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.1491870IPR017930Myb domain
SuperFamilySSF466892.45E-2821117IPR009057Homeodomain-like
SMARTSM007172.1E-102272IPR001005SANT/Myb domain
PfamPF002493.1E-132370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-222477IPR009057Homeodomain-like
CDDcd001679.25E-92670No hitNo description
PROSITE profilePS5129425.33971125IPR017930Myb domain
SMARTSM007179.6E-1675123IPR001005SANT/Myb domain
PfamPF002495.9E-1576119IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2578126IPR009057Homeodomain-like
CDDcd001672.45E-1178118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1901348Biological Processpositive regulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MRKPECPAAN SSNAGAAAAK LRKGLWSPEE DERLVAYMLR SGQGSWSDVA RNAGLQRCGK  60
SCRLRWINYL RPDLKRGAFS PQEEELIVSL HAILGNRWSQ IAARLPGRTD NEIKNFWNST  120
IKKRLKNSSA ASSPAATDCA SPEPNNKVAA AGSCPDLSVL DHQDGGHHHA MTTTTAGLWM  180
VDSSSSCTSS TSPMHQFQRP TTTMAAAVAS GSYGGLVPFP DQVRGVVADT GGFFHGHAAP  240
AFKHQVAALH GGGYYYGSAP RHHGMTTTTT TVALEGSGGC FISGEGMLGV PPLLLEPMSA  300
ALEQDQGQTL MASSGNNNPK NNSSSNTTDT TTTTTLSNNE SNVTDTTTKD NTTNTISQVN  360
SGSNNVYWEG ARQQYMSRNV MHGEWDLEEL MKDVSSLPFL DFQVE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-282012524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052606
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00599PBMTransfer from AT5G12870Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052606_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN6340850.0JN634085.1 Zea mays secondary wall MYB46 transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241859.10.0uncharacterized protein LOC100857076
RefseqXP_008662308.10.0secondary wall MYB46 transcription factor isoform X1
TrEMBLG3M8E60.0G3M8E6_MAIZE; Secondary wall MYB46 transcription factor
STRINGGRMZM2G052606_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98213545
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.19e-66myb domain protein 46
Publications ? help Back to Top
  1. Zhong R, et al.
    Transcriptional activation of secondary wall biosynthesis by rice and maize NAC and MYB transcription factors.
    Plant Cell Physiol., 2011. 52(10): p. 1856-71
    [PMID:21908441]