PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052499_P01
Common NameCA5P17, LOC103640778, ZEAMMB73_579820
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family NF-YC
Protein Properties Length: 439aa    MW: 49486.9 Da    PI: 4.597
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052499_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC67.91.7e-2123121297
              NF-YC   2 lksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifd 90 
                        +k fw k+   ie  +df +h++P++ +kk++ a +   m+++++P++++kac +f+ el+l +w+ a++ +r+ +  sdia+++++ + + 
  GRMZM2G052499_P01  23 IKEFWRKKqeeIEAIEDFGEHTIPVTCLKKVICAKKGKMMMTSDTPTFMTKACKIFVQELSLSAWMCANSHNRSIVLDSDIAESIASIESYG 114
                        799**9876779999***************************************************************************** PP

              NF-YC  91 flvdivp 97 
                        fl d+  
  GRMZM2G052499_P01 115 FLNDVLC 121
                        ****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF001251.7E-623104IPR007125Histone H2A/H2B/H3
SuperFamilySSF471132.67E-1245119IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.8E-1446120IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDRPINIRTS PRTPLSLSEQ QTIKEFWRKK QEEIEAIEDF GEHTIPVTCL KKVICAKKGK  60
MMMTSDTPTF MTKACKIFVQ ELSLSAWMCA NSHNRSIVLD SDIAESIASI ESYGFLNDVL  120
CAHLEKYKSD THLQSIKNPH HNRAINQSPT YLQPLSHQYQ MTQFIPQSTR YCPFIHIPPT  180
LPQTNDIHMH LPLPLPPITY MTKDLVFFEK GISNNDDAID LVTPPQLLPE ALSNIPNKCY  240
MCNIASTDTY CVGSAKTCNF IAEDGDMVFH FPYVPSKPFQ LSTSLPMTNG GCSIYTDITE  300
LNHIKLKVTH IEKSTYGINP EATFNVIDGQ QHAGDETTAA NHMHTEHGEL DAEFVTTTNA  360
NADDNNINWD EVDMASDSML MEFWRDVMMK EDPTSLPDTI STNDTILDPS DMLELEGCCD  420
DSYLLDDVMS NTSNDVRHG
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052499
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052499_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7269930.0KJ726993.1 Zea mays clone pUT3965 CCAAT-HAP5 transcription factor (CA5P17) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008662484.10.0uncharacterized protein LOC103640778
TrEMBLK7TX380.0K7TX38_MAIZE; CCAAT-HAP5 transcription factor
STRINGGRMZM2G052499_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91742145
Representative plantOGRP1164537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-13nuclear factor Y, subunit C2