PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G052377_P01
Common NameLOC103651761
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 288aa    MW: 31153.7 Da    PI: 7.7284
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G052377_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.16.5e-161663148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g W++eEde+l+  ++++G  +W++I++  g+ R++k+c++rw +yl
  GRMZM2G052377_P01 16 KGLWSPEEDERLASHIARFGVSCWSSIPELAGLQRCGKSCRLRWMNYL 63
                       678*******************************************97 PP
2Myb_DNA-binding47.44.5e-1569111145
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        rgr++++E++l++ ++k lG+  W+ Ia++++ gR+++++k++w+
  GRMZM2G052377_P01  69 RGRFSQQEEDLIIALHKALGNS-WSQIAARLP-GRSDNEIKNFWN 111
                        89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23866IPR009057Homeodomain-like
PROSITE profilePS5129415.9681163IPR017930Myb domain
SuperFamilySSF466891.41E-2714110IPR009057Homeodomain-like
SMARTSM007172.1E-111565IPR001005SANT/Myb domain
PfamPF002491.2E-141663IPR001005SANT/Myb domain
CDDcd001671.13E-101963No hitNo description
PROSITE profilePS5129424.2964118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.1E-2567118IPR009057Homeodomain-like
SMARTSM007177.1E-1568116IPR001005SANT/Myb domain
PfamPF002491.8E-1369111IPR001005SANT/Myb domain
CDDcd001671.46E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRVHPCCSE EKKVRKGLWS PEEDERLASH IARFGVSCWS SIPELAGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IALHKALGNS WSQIAARLPG RSDNEIKNFW NARLRKKIRQ  120
KEASSSASST AGSKEPAARR NRPNSTENGD DRIKPAPPPV FTPYPFVPPS PRDHVAAAAS  180
GASSCDDYSS AAGSFVADPA AAAACAAVHV GYATDRSAAA AESGVTPTPP SMTTSTSACT  240
DDARGSCDDG FLRAMVDDPS FLFGDFYLDS DGGHHGQIMS FWESHAFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RLRKKIR
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G052377
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G052377_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4741392e-41AF474139.1 Oryza sativa typical P-type R2R3 Myb protein gene, partial cds.
GenBankAP0029122e-41AP002912.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0028E10.
GenBankAP0033392e-41AP003339.4 Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OJ1276_B06.
GenBankAP0149572e-41AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
GenBankAY4593432e-41AY459343.1 Oryza sativa (japonica cultivar-group) clone CL018501.1 R2R3-MYB gene region.
GenBankCP0126092e-41CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008675683.10.0myb-related protein Hv33
TrEMBLA0A3L6FD580.0A0A3L6FD58_MAIZE; Transcription factor MYB86
STRINGGRMZM2G052377_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.19e-61myb domain protein 86