PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GRMZM2G051793_P01 | ||||||||
Common Name | Zm.148903 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 1060aa MW: 117672 Da PI: 8.8831 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26 | 2.2e-08 | 412 | 455 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +WT++E+ +l+ +++ G+ +W Ia t+g+ Rt+ qc r+q GRMZM2G051793_P01 412 AWTADEETRLLLIIQEKGMCNWIDIAVTLGTYRTPFQCLVRYQR 455 8*****************************99*******99995 PP | |||||||
2 | Myb_DNA-binding | 42.9 | 1.1e-13 | 464 | 508 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++WT+eEd++l av+ +G + W ++++ + gRt+ qc +rw+k l GRMZM2G051793_P01 464 KAWTKEEDLQLQAAVETFGQK-WQLVSASLD-GRTGTQCSNRWRKTL 508 58*******************.*********.************975 PP | |||||||
3 | Myb_DNA-binding | 30 | 1.2e-09 | 516 | 560 | 2 | 47 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 grW +Ed++l vk+ G+g+W++Ia ++ gRt q+ +rw + GRMZM2G051793_P01 516 GRWLLDEDKRLMVTVKLIGPGRWSLIAPFIP-GRTQTQIFERWCNI 560 89*****************************.***********996 PP | |||||||
4 | Myb_DNA-binding | 34.1 | 6.5e-11 | 569 | 612 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W ++Ed l+ av ++G+ W++I++t+ gR + +c rw+k+ GRMZM2G051793_P01 569 DWRPDEDSTLLAAVSEFGPC-WSKISKTIIPGRNDSMCYRRWRKL 612 5*****************88.********99************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.063 | 306 | 402 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.0E-5 | 310 | 406 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-12 | 312 | 329 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00132 | 369 | 402 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.3E-12 | 376 | 417 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.64E-5 | 379 | 422 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.084 | 405 | 457 | IPR017877 | Myb-like domain |
SMART | SM00717 | 7.3E-5 | 409 | 459 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 3.38E-21 | 409 | 504 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 8.7E-6 | 411 | 455 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-11 | 418 | 465 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.958 | 458 | 512 | IPR017930 | Myb domain |
SMART | SM00717 | 6.0E-12 | 462 | 510 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.2E-12 | 464 | 507 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.54E-10 | 465 | 508 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-15 | 466 | 510 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.5E-7 | 514 | 563 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-13 | 514 | 561 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 516 | 561 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 15.069 | 516 | 565 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.91E-21 | 516 | 609 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.41E-7 | 517 | 561 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-13 | 562 | 616 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.2E-7 | 566 | 615 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 10.784 | 568 | 617 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.1E-8 | 569 | 612 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.96E-8 | 570 | 612 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1060 aa Download sequence Send to blast |
MDWYSDDSDP DIDEDLREDL DALRRSCILS GADPDAAVAQ VSSGLAGPST PALAAAPGAA 60 ADHHHHASSS DDEEDEDLAL VRSIRANLHH LHNSKASTVL PDAAPAPRDD DDPSSRPICT 120 WPPSDTDEEE DDLETLRAIQ RRFSHYQSST STASPKTMKP EASQGVHSDL FADRSGDDFA 180 VQKQNAIVPH GDGFPKAALL LVDALKKNRA YQKFIRRKMV NIEAKIEENK DLRDRVKCLL 240 GYQLSCRKSV SRSLGQKEDP RVRLISPLKS TQPCTKNKYR KIPALFLGPA ENPHVSKYEM 300 ALKQFPMSFK KQPWSDAEKD KLARGIKQQY QETLILDSLN NGSADGDFSA LDMAYALTNG 360 AGNFEVTPEN LRSVLPLINW DKISAMYLPG RSGAECESRW LNCDDPLINH EAWTADEETR 420 LLLIIQEKGM CNWIDIAVTL GTYRTPFQCL VRYQRSLNPH ILNKAWTKEE DLQLQAAVET 480 FGQKWQLVSA SLDGRTGTQC SNRWRKTLHP EKTSVGRWLL DEDKRLMVTV KLIGPGRWSL 540 IAPFIPGRTQ TQIFERWCNI LDPDLYLDDW RPDEDSTLLA AVSEFGPCWS KISKTIIPGR 600 NDSMCYRRWR KLCKHEVQKA REARQLKKAI FQNNFVDREK ERPAICPRDL ISLLPSKGDG 660 CDVAIVRYCK FLCSSCILIS LGGSEKQGEE NHLALSNIVN ISSGLDCVAA NSVLNASSRR 720 PRRVSSGRRS KKHTEGNNIA APDDLNASSS APSSSIKRKS TTGNNVAAKK RSRVSISVNA 780 DNEVEKNRIT DSVAVSEEGL VKKRTRRPKP VGNEGAVRKR GGSNNEVGTN IITESVAVGE 840 EGVVKKRTRR SKPVGNEGAD NEVGTYRITG SVVVGEEGVV KKRTRRSSKP VDNEEVVRKM 900 RGSINNYDEA GTNTMMNSAF GEEEVVKKKT RHSKPVGTEG AASIGGDGMV NKRRTGSVST 960 ENLGAVRKRK IVSSRRKLAE VNLPTEEGVP NAVPDLDFPC AISEERAVDV GNMDKGRRKS 1020 TPRPKQINMP EEDADKNSTF TRLVNCLSFA RMKGIDRNKR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-25 | 382 | 659 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-25 | 382 | 659 | 3 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 951 | 969 | KRRTGSVSTENLGAVRKRK |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | GRMZM2G051793 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | GRMZM2G051793_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020397392.1 | 0.0 | uncharacterized protein LOC103631936 | ||||
TrEMBL | A0A1D6HS23 | 0.0 | A0A1D6HS23_MAIZE; Myb domain protein 4r1 | ||||
STRING | GRMZM2G051793_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6594 | 35 | 43 | Representative plant | OGRP7355 | 16 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18100.2 | 1e-137 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | GRMZM2G051793_P01 |