PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G051785_P01
Common NameLOC100272800, ZEAMMB73_948663
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 507aa    MW: 53502 Da    PI: 5.9579
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G051785_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS241.73.1e-741465062374
               GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                        v+ Lle+++  ++gd + a+++Larl+++  sp g    p+ R+aa++  AL + l+ s +      ++ +t++ +++ ++aa++++ ++sP
  GRMZM2G051785_P01 146 VDELLEAVRRADAGDSTGAREILARLNHRlPSPPGHphpPILRAAAHLRDALLRVLVTSAPAP----AAVSTTPLDVALKVAAHRALADASP 233
                        5789************************99999997566899************999933332....33334445599999*********** PP

               GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.......egppslRiTgvgspesg.skeeleetgerLakfAeelg 173
                        +++f+++t  qa+l+a+ +++rvH++D+d++ G+ W++L+q+La +         +pp l++T+++sp s+ +  el+ t++ L++fA+ lg
  GRMZM2G051785_P01 234 TVQFANFTSTQALLDALGTARRVHVVDLDVGFGGRWAPLMQELALQWrrapvspLPPPCLKVTALVSPGSSaHPLELHLTHQGLTRFAADLG 325
                        ********************************************54322455445599*********9988899****************** PP

               GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                        ++fefn+++ + l+ l +  L+v pg+a+aV+l++    +     ++     ++L++vk+l+P vvv+v++ + +++ ++ ++ l+ ++  +
  GRMZM2G051785_P01 326 ISFEFNAVAFDPLDPLPPTGLSVAPGDAVAVHLSVGSG-V-----PS----AATLRVVKQLRPAVVVCVDHGCHRGDLPLSHHALSVVRSSA 407
                        *********************************99332.2.....23....469************************************** PP

               GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgs 357
                        a+++sl+a  ++ +++ + +E+ +++++++ ++             +  Wr +l++aGF pv+ls+ a++qa++l+r+++  g++ve+++++
  GRMZM2G051785_P01 408 AFLESLDAA-GAPADAVARLEEYVVRPRVERLLLGDR---------MPPWRTMLDSAGFAPVQLSNAAEAQAECLVRRTPTPGFHVEKRQAA 489
                        ******887.6777888899**********9998544.........56******************************************** PP

               GRAS 358 lvlgWkdrpLvsvSaWr 374
                        l l W+d +Lv+vSaWr
  GRMZM2G051785_P01 490 LALRWQDSELVMVSAWR 506
                        ****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098537.084119486IPR005202Transcription factor GRAS
PfamPF035141.1E-71146506IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MTSALPHMSE LPDGGAGGNG QDEAAAFASP AKRLRRSPAL EPTSVLYNRS PSPPTSSSLV  60
SSAAPEPPPI SAEDWEAVLS GGDMAAPPAA ARSQDASFLR WIMDADAQVD AFDPFLPCQE  120
TAVVEPFLQP QLPLPVADDL EPGATVDELL EAVRRADAGD STGAREILAR LNHRLPSPPG  180
HPHPPILRAA AHLRDALLRV LVTSAPAPAA VSTTPLDVAL KVAAHRALAD ASPTVQFANF  240
TSTQALLDAL GTARRVHVVD LDVGFGGRWA PLMQELALQW RRAPVSPLPP PCLKVTALVS  300
PGSSAHPLEL HLTHQGLTRF AADLGISFEF NAVAFDPLDP LPPTGLSVAP GDAVAVHLSV  360
GSGVPSAATL RVVKQLRPAV VVCVDHGCHR GDLPLSHHAL SVVRSSAAFL ESLDAAGAPA  420
DAVARLEEYV VRPRVERLLL GDRMPPWRTM LDSAGFAPVQ LSNAAEAQAE CLVRRTPTPG  480
FHVEKRQAAL ALRWQDSELV MVSAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-2618550639375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.53830.0meristem| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G051785
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G051785_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394660.0BT039466.1 Zea mays full-length cDNA clone ZM_BFc0014N06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001140725.10.0scarecrow-like 6
TrEMBLA0A3L6DFD30.0A0A3L6DFD3_MAIZE; Scarecrow-like protein 6
TrEMBLB4FQS80.0B4FQS8_MAIZE; Uncharacterized protein
TrEMBLK0DCK50.0K0DCK5_MAIZE; GRAS32 GRAS type transcription factor (Fragment)
STRINGGRMZM2G051785_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Representative plantOGRP1407444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.13e-71GRAS family protein