PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G051528_P02
Common NameLOC100037755, ZEAMMB73_025862
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 272aa    MW: 29374.4 Da    PI: 4.286
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G051528_P02genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.4e-1026512248
                       T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                       ++W++Ia +++ gRt++++k++w+++l
  GRMZM2G051528_P02 26 PRWSLIAGHLP-GRTDNEIKNHWNSHL 51
                       37*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.971155IPR017930Myb domain
CDDcd001675.11E-72551No hitNo description
SuperFamilySSF466892.26E-82654IPR009057Homeodomain-like
PfamPF002491.7E-72751IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-132752IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLINLANFLE LLDCPFSECQ VSFFFPRWSL IAGHLPGRTD NEIKNHWNSH LRRRGRAGDS  60
RDDGVVVNID LVKLPGGRRA SSRGIVAAAK PAGKNKEKRK NGKGRNNVAE AEQQLEEEDA  120
NVSTTTPRTQ SHCASAAQSE EQAQASASGL TSEEDLLALS EEMVVSALLA PGSPKLLEVG  180
PDGSCVDGDG GLSGDSGRGS GGPSGDVAQE LHLDDDAIMD WDSMGLDIPT ADDTWNPLVW  240
DYDQTSLVPE PEGEGRRQRD EMMSDLFFLD NL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.859760.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G051528
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G051528_P02
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9710830.0EU971083.1 Zea mays clone 357079 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105937.11e-176R2R3 Myb transcription factor MYB-IF25
TrEMBLA0A3L6DJU31e-175A0A3L6DJU3_MAIZE; Myb-related protein P
TrEMBLQ84U751e-175Q84U75_MAIZE; MYB-IF25 transcription factor
STRINGGRMZM2G051528_P011e-176(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-10myb domain protein 12