PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G051528_P01 | ||||||||
Common Name | LOC100037755, ZEAMMB73_025862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB | ||||||||
Protein Properties | Length: 333aa MW: 36230.2 Da PI: 4.9223 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT eEde+l+++++++G g+W++ ++ g+ R++k+c++rw +yl GRMZM2G051528_P01 14 KGRWTREEDEILARYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 55.7 | 1.1e-17 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T+eE++ +v++++ lG++ W++Ia +++ gRt++++k++w+++l GRMZM2G051528_P01 67 RGNITEEEEDVIVKLHATLGNR-WSLIAGHLP-GRTDNEIKNHWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.7E-22 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 17.351 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.02E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.7E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.45E-11 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.642 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.8E-16 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.8E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.80E-11 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MGRAPCCGKV GLKKGRWTRE EDEILARYIE EHGEGSWRSL PKNAGLLRCG KSCRLRWINY 60 LRAGLKRGNI TEEEEDVIVK LHATLGNRWS LIAGHLPGRT DNEIKNHWNS HLRRRGRAGD 120 SRDDGVVVNI DLVKLPGGRR ASSRGIVAAA KPAGKNKEKR KNGKGRNNVA EAEQQLEEED 180 ANVSTTTPRT QSHCASAAQS EEQAQASASG LTSEEDLLAL SEEMVVSALL APGSPKLLEV 240 GPDGSCVDGD GGLSGDSGRG SGGPSGDVAQ ELHLDDDAIM DWDSMGLDIP TADDTWNPLV 300 WDYDQTSLVP EPEGEGRRQR DEMMSDLFFL DNL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 8e-25 | 12 | 115 | 25 | 127 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.85976 | 0.0 | ear |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G051528 |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G051528_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF521881 | 0.0 | AF521881.1 Zea mays R2R3 Myb transcription factor MYB-IF25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001105937.1 | 0.0 | R2R3 Myb transcription factor MYB-IF25 | ||||
Swissprot | P27898 | 3e-68 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A3L6DJU3 | 0.0 | A0A3L6DJU3_MAIZE; Myb-related protein P | ||||
TrEMBL | Q84U75 | 0.0 | Q84U75_MAIZE; MYB-IF25 transcription factor | ||||
STRING | GRMZM2G051528_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-64 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G051528_P01 |
Entrez Gene | 100037755 |