PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G051528_P01
Common NameLOC100037755, ZEAMMB73_025862
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 333aa    MW: 36230.2 Da    PI: 4.9223
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G051528_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +grWT eEde+l+++++++G g+W++ ++  g+ R++k+c++rw +yl
  GRMZM2G051528_P01 14 KGRWTREEDEILARYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP

2Myb_DNA-binding55.71.1e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ T+eE++ +v++++ lG++ W++Ia +++ gRt++++k++w+++l
  GRMZM2G051528_P01  67 RGNITEEEEDVIVKLHATLGNR-WSLIAGHLP-GRTDNEIKNHWNSHL 112
                        7999******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.7E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.351961IPR017930Myb domain
SuperFamilySSF466892.02E-2911108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002497.0E-161461IPR001005SANT/Myb domain
CDDcd001674.45E-111661No hitNo description
PROSITE profilePS5129424.64262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2465115IPR009057Homeodomain-like
SMARTSM007171.8E-1666114IPR001005SANT/Myb domain
PfamPF002492.8E-1567112IPR001005SANT/Myb domain
CDDcd001671.80E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MGRAPCCGKV GLKKGRWTRE EDEILARYIE EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAGLKRGNI TEEEEDVIVK LHATLGNRWS LIAGHLPGRT DNEIKNHWNS HLRRRGRAGD  120
SRDDGVVVNI DLVKLPGGRR ASSRGIVAAA KPAGKNKEKR KNGKGRNNVA EAEQQLEEED  180
ANVSTTTPRT QSHCASAAQS EEQAQASASG LTSEEDLLAL SEEMVVSALL APGSPKLLEV  240
GPDGSCVDGD GGLSGDSGRG SGGPSGDVAQ ELHLDDDAIM DWDSMGLDIP TADDTWNPLV  300
WDYDQTSLVP EPEGEGRRQR DEMMSDLFFL DNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-251211525127MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.859760.0ear
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G051528
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G051528_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218810.0AF521881.1 Zea mays R2R3 Myb transcription factor MYB-IF25 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105937.10.0R2R3 Myb transcription factor MYB-IF25
SwissprotP278983e-68MYBP_MAIZE; Myb-related protein P
TrEMBLA0A3L6DJU30.0A0A3L6DJU3_MAIZE; Myb-related protein P
TrEMBLQ84U750.0Q84U75_MAIZE; MYB-IF25 transcription factor
STRINGGRMZM2G051528_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-64myb domain protein 12
Publications ? help Back to Top
  1. Dias AP,Braun EL,McMullen MD,Grotewold E
    Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication.
    Plant Physiol., 2003. 131(2): p. 610-20
    [PMID:12586885]
  2. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  3. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  4. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  5. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  6. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]