PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G051256_P01
Common NameMYB-IF35
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 345aa    MW: 37581.3 Da    PI: 4.2977
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G051256_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.7e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +grWT+eEde l++++k++G g+W++ ++  g+ R++k+c++rw +yl
  GRMZM2G051256_P01 14 KGRWTKEEDEVLARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP

2Myb_DNA-binding52.61e-1667112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+ ++eE++ ++++++ lG++ W++Ia +++ gRt++++k++w+++l
  GRMZM2G051256_P01  67 RGNISEEEEDMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 112
                        7899******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129417.323961IPR017930Myb domain
SuperFamilySSF466892.43E-2911108IPR009057Homeodomain-like
SMARTSM007177.4E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001673.56E-111661No hitNo description
PROSITE profilePS5129424.35162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.8E-2565115IPR009057Homeodomain-like
SMARTSM007171.1E-1666114IPR001005SANT/Myb domain
PfamPF002493.7E-1567112IPR001005SANT/Myb domain
CDDcd001673.87E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0020040anatomyleaf base
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTKE EDEVLARYIK EHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRAGLKRGNI SEEEEDMIIK LHATLGNRWS LIAGHLPGRT DNEIKNYWNS HLSRRAADFR  120
DGVVVDIDLS KLPGGGKRRG GRASRGAVVA AAKEKKAKEK DDRGNSKVAE AEQQLRDTED  180
DDGGSVSTPR PQSDDCGTAQ SEEEQAQASA SGLTSDGHGP EEEEEEDPLA LSEEMVSALL  240
APESPKLEVG PDGSCMDSYS GPPSGESGCG SSGPSGDVAQ DLDLDDDKAI MDWDLMGLDI  300
STAGDMWDQL VWDYDETLVT EPEGGEEGHQ QQDDVMSDLF FLDNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C8e-24121152104C-Myb DNA-Binding Domain
1msf_C8e-24121152104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.138650.0endosperm| meristem| sheath| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G051256
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Function -- GeneRIF ? help Back to Top
  1. overexpression increases chilling tolerance in Arabidopsis
    [PMID: 30553139]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G051256_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5218800.0AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds.
GenBankBT0399010.0BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds.
GenBankBT0633080.0BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds.
GenBankBT0882000.0BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105092.10.0R2R3 Myb transcription factor MYB-IF35
SwissprotP278985e-73MYBP_MAIZE; Myb-related protein P
TrEMBLA0A3L6FA180.0A0A3L6FA18_MAIZE; Myb-related protein P
TrEMBLQ84U760.0Q84U76_MAIZE; MYB transcription factor
STRINGGRMZM2G051256_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.15e-69myb domain protein 12
Publications ? help Back to Top
  1. Dias AP,Braun EL,McMullen MD,Grotewold E
    Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication.
    Plant Physiol., 2003. 131(2): p. 610-20
    [PMID:12586885]
  2. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  3. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  4. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  5. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  6. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]
  7. Eitle MW, et al.
    Polyphenolic profiling of roots (Vitis spp.) under grape phylloxera (D. vitifoliae Fitch) attack.
    Plant Physiol. Biochem., 2019. 135: p. 174-181
    [PMID:30553139]