PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G050939_P04 | ||||||||
Common Name | TFIIIA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C2H2 | ||||||||
Protein Properties | Length: 226aa MW: 26137.9 Da PI: 8.6753 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.4 | 1.3e-06 | 21 | 45 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp +Cgk F+ s Lk+H +H GRMZM2G050939_P04 21 FICPkvNCGKAFKYASKLKKHEESH 45 78*******************9988 PP | |||||||
2 | zf-C2H2 | 16.8 | 1.9e-05 | 112 | 136 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC+ sFs ksnL +H + H GRMZM2G050939_P04 112 KCHieDCKCSFSKKSNLDKHVKAvH 136 7*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.2E-6 | 17 | 45 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.87E-5 | 18 | 47 | No hit | No description |
SMART | SM00355 | 0.0097 | 21 | 45 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.385 | 21 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 23 | 45 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 19 | 53 | 78 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 55 | 78 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 17 | 81 | 102 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.27E-7 | 92 | 153 | No hit | No description |
PROSITE profile | PS50157 | 11.843 | 111 | 141 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.069 | 111 | 136 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.4E-4 | 111 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 113 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 2.5E-6 | 137 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.286 | 142 | 171 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 1.8 | 142 | 168 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 168 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008097 | Molecular Function | 5S rRNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0080084 | Molecular Function | 5S rDNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MQRHVQEIHK DVSPCESKKE FICPKVNCGK AFKYASKLKK HEESHVQLEY TEVMCCEPGC 60 MKFFSNMECL KAHNQSCHQY VQCDICGTKQ LKKNFQRHHR MHEGSCVTER VKCHIEDCKC 120 SFSKKSNLDK HVKAVHEQRR PFVCQFSGCG KRFSYKHVRD NHEKSSAHVH TEGDFVEADE 180 QRPRSVGGCK RKPVSVESLM RKRVAAPDDG PAHADATEYL RWLLSV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.30408 | 0.0 | meristem| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G050939 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Both isoforms 1 and 2 transcripts are expressed in seedlings and both TFIIIA and TFIIIA-C are present at similar ratios in 10-day-old seedlings (at protein level). In correlation with the reorganization of 5S rDNA chromatin to a mature state, full-length isoform 1 protein TFIIIA with transcriptional activity accumulates and permits de novo transcription of 5S rRNA. Isoforms 1 and 2 transcripts accumulate in various tissues of the reproductive phase, including flowers and siliques, but only isoform 2 is present in mature seeds. In flowers, both TFIIIA and TFIIIA-C are present at similar ratios (at protein level). Very low amounts of TFIIIA are found in extracts from fresh siliques compared to TFIIIA-C. The amount of full-length TFIIIA protein progressively increases from fresh siliques to seeds concomitant with lower proportions of the shorter TFIIIA-C protein (at protein level) thus leading to 5S rRNA accumulation in the seed. {ECO:0000269|PubMed:22353599}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, flowers, siliques and seeds. {ECO:0000269|PubMed:22353599}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00229 | DAP | Transfer from AT1G72050 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G050939_P04 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT062802 | 0.0 | BT062802.1 Zea mays full-length cDNA clone ZM_BFb0348B01 mRNA, complete cds. | |||
GenBank | BT066827 | 0.0 | BT066827.1 Zea mays full-length cDNA clone ZM_BFb0075I12 mRNA, complete cds. | |||
GenBank | BT067763 | 0.0 | BT067763.1 Zea mays full-length cDNA clone ZM_BFc0152L06 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349024.1 | 1e-167 | uncharacterized LOC100383605 isoform 2 | ||||
Refseq | XP_008648128.1 | 1e-165 | uncharacterized LOC100383605 isoform X1 | ||||
Swissprot | Q84MZ4 | 2e-72 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | C0P3D3 | 1e-166 | C0P3D3_MAIZE; Transcription factor IIIA | ||||
STRING | GRMZM2G050939_P02 | 1e-164 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.1 | 1e-74 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G050939_P04 |
Publications ? help Back to Top | |||
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