PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G050550_P01
Common NameLOC100284969
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB
Protein Properties Length: 345aa    MW: 36928.7 Da    PI: 9.5356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G050550_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.2e-192166147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                       +g+W++eEde l ++v+++G ++W++I+r ++ gR++k+c++rw + 
  GRMZM2G050550_P01 21 KGPWSPEEDEALQRLVARHGARNWSLISRSIP-GRSGKSCRLRWCNQ 66
                       79******************************.***********985 PP
2Myb_DNA-binding52.61.1e-1675117347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        ++T+eEd+ +++a++++G++ W+tIar +  gRt++ +k++w++ 
  GRMZM2G050550_P01  75 PFTAEEDDTILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 117
                        89******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129426.5971671IPR017930Myb domain
SuperFamilySSF466897.86E-3218114IPR009057Homeodomain-like
SMARTSM007178.3E-172069IPR001005SANT/Myb domain
PfamPF002492.2E-182166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.2E-262274IPR009057Homeodomain-like
CDDcd001674.81E-162365No hitNo description
SMARTSM007173.1E-1472120IPR001005SANT/Myb domain
PROSITE profilePS5129419.88273122IPR017930Myb domain
PfamPF002495.1E-1475117IPR001005SANT/Myb domain
CDDcd001672.23E-1175118No hitNo description
Gene3DG3DSA:1.10.10.605.3E-2375121IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0010200Biological Processresponse to chitin
GO:0042742Biological Processdefense response to bacterium
GO:0046686Biological Processresponse to cadmium ion
GO:0050832Biological Processdefense response to fungus
GO:2000022Biological Processregulation of jasmonic acid mediated signaling pathway
GO:2000031Biological Processregulation of salicylic acid mediated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MASSSPSCRG SGGKSDVDRI KGPWSPEEDE ALQRLVARHG ARNWSLISRS IPGRSGKSCR  60
LRWCNQLSPQ VEHRPFTAEE DDTILRAHAR FGNKWATIAR LLSGRTDNAI KNHWNSTLKR  120
KYYAASDAVV ADADDERPLK RTSSDGHPGL CFSPGSPSGS DLSDSSNHSL PSVMPSAASA  180
AAVTSHQQQQ HVYRPVPRAG GVVMLPVAPL APPPPPQPPA TSLSLSLSLP GLDGQKPEAS  240
QAVLTPAPAP PQPPLQIQQQ QPAPPQMPPP QAQPSLPFQL QAAATNLTSQ QPAAAPFSSE  300
FLLLMQEMIR IEVRNYMSGS GLDPRTDGAA VHAVSKRMMG MAKIE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-39181214107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.676720.0glume
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G050550
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00596DAPTransfer from AT5G67300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G050550_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9703000.0EU970300.1 Zea mays clone 343188 sucrose responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151336.10.0sucrose responsive element binding protein
TrEMBLB6TZ850.0B6TZ85_MAIZE; Sucrose responsive element binding protein
STRINGGRMZM2G050550_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.14e-66myb domain protein r1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Insights into corn genes derived from large-scale cDNA sequencing.
    Plant Mol. Biol., 2009. 69(1-2): p. 179-94
    [PMID:18937034]