PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049695_P01
Common NameLOC103634904, ZEAMMB73_851448, Zm.80852
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 347aa    MW: 36142.8 Da    PI: 10.833
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049695_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding483e-15137181347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
  GRMZM2G049695_P01 137 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 181
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.68318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.501130186IPR017930Myb domain
SuperFamilySSF466894.04E-18132187IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-18133185IPR006447Myb domain, plants
SMARTSM007171.5E-11134184IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-11134180IPR009057Homeodomain-like
PfamPF002493.0E-12137181IPR001005SANT/Myb domain
CDDcd001678.34E-10137182No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MARKCSSCGN NGHNSRTCGG HSRTAAAFEN NGGGVRLFGV QLHVGSSSPV AVAMKRCFSM  60
ECLSPPPPLP PPPAAPAYYA AALAAANSSS PSASASASSS SSLVSVEEAQ APEKMASGYL  120
SDGLVGRAQA ERKKGVPWTE DEHRRFLAGL EKLGKGDWRG ISRHFVTTRT PTQVASHAQK  180
YFLRQSSLAH KKRRSSLFDV VENAAERATT TSSRERPRLT VTDAIIATAS AAAPGTTTAA  240
LPALSLGIRR PARPEYHAAL PPNSLSLQLP RCSAAMGSAS PSPSLALALA GPKHKHPSPS  300
SLTAAKASSS GQAPDLELKI STGRQSEHQV QTGSPPRTPF LGTIRVT
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.808520.0sheath
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049695
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049695_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9669680.0EU966968.1 Zea mays clone 298539 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008655699.10.0transcription factor MYB1R1 isoform X2
TrEMBLK7UQX80.0K7UQX8_MAIZE; Putative MYB DNA-binding domain superfamily protein
STRINGGRMZM2G049695_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.12e-47MYB_related family protein