PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049229_P01
Common NameLOC103638892, ZEAMMB73_374826, Zm.137167
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family bHLH
Protein Properties Length: 703aa    MW: 75331.2 Da    PI: 6.434
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049229_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12523568454
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  GRMZM2G049229_P01 523 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 568
                        799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142157.2E-5255241IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39519568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-18522590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-14522572No hitNo description
PfamPF000104.7E-10523568IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-18523590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD LPAYPWGAPA GGGNPPPPQM PPAMAMAPGF NQDTLQQRLQ  60
AMIEGSRETW TYAIFWQSSL DAATGASLLG WGDGYYKGCD DDKRRHRPPL TPAAQAEQEH  120
RKRVLRELNS LISGGASAAP APAPDEAVEE EVTDTEWFFL VSMTQSFLNG SGLPGQALFA  180
GHHTWIAAGL SSAPCDRARQ AYNFGLRTMV CFPVGTGVLE LGSTDVVFQT AETMAKIRSL  240
FGGGPGGGSW PPVQPQAAPQ QQHAAEADQA AETDPSVLWL ADAPVVDIKD SYSHPSAAEI  300
SVSKPPPPPP PPQIHFENGS TSTLTENPSP SVHAPPAPPA PPQRQQQNQG PFRRELNFSD  360
FASNPSLAAA PPFFKPESGE ILSFGVDSNA QRNPSPAPPA SLTTAPGSLF SQSQHTATAA  420
ANDAKNNNNN NKRSMEATSL ASNTNHHPAA AANEGMLSFS SAPTARPSAG TGAPAKSESD  480
HSDLDASVRE VESSRVVAPP PEAEKRPRKR GRKPANGREE PLNHVEAERQ RREKLNQRFY  540
ALRAVVPNVS KMDKASLLGD AISYINELRG KLTSLESDRE TLQAQVEALK KERDARPHPH  600
PAAGLGGHDA GGPRCHAVEI DAKILGLEAM IRVQCHKRNH PSARLMTALR ELDLDVYHAS  660
VSVVKDLMIQ QVAVKMASRM YSQDQLSAAL YSRLAEPGSV MGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A2e-61482412192Transcription factor MYC3
4rqw_B2e-61482412192Transcription factor MYC3
4rs9_A2e-61482412192Transcription factor MYC3
4yz6_A2e-61482412192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1504512KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.1586490.0meristem
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049229
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049229_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0611070.0AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008659898.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A3L6DH880.0A0A3L6DH88_MAIZE; Transcription factor MYC2
TrEMBLK7VC270.0K7VC27_MAIZE; Putative HLH DNA-binding domain superfamily protein
STRINGGRMZM2G049229_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.17e-66bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]