PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G049194_P02 | ||||||||
Common Name | MYBR67, umc2585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 630aa MW: 70050.6 Da PI: 6.5644 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.5e-08 | 513 | 560 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ GRMZM2G049194_P02 513 AWTLSEVVKLVDGVARYGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 560 7************************9999999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.154 | 506 | 565 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.33E-14 | 508 | 564 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 508 | 563 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-8 | 510 | 563 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.41E-18 | 512 | 562 | No hit | No description |
Pfam | PF00249 | 1.1E-5 | 513 | 560 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 630 aa Download sequence Send to blast |
MKFDLSMEMD DSHGTMVNKS EENDFEKKGT SDPVVYQLVR VEGDGTLVPA TEDDVLQFEH 60 FLHNEKVDLP PIEDADHVEE FFNNDCMLLK KPDLEDGSSK LETVEAHTQK LGANLEENIL 120 QSLDDSLSPP SDFRIHSQHS DKLLTEQGAN VTRQDNASTE TTKSTVLNDS CCAEKYKADA 180 CSRSVCDTST DPSVSGVNSS MPDFSILRGE VCLDDLTIRE LQEAFRATFG RQTNVKDKIW 240 LKRRITMGLT NSYDVPSSGC VVKDYKIVGK DAKNDMSDMD ERAKTGLRAT SVVIYPGNEG 300 DSPSSSYYQS EDQEDSSKRV PIHNDEPQGN LLGEQCTDKR TRKPTKRYIE ELSDIETHDS 360 TVKNSSPAKR PAHDELLMNP RVAPFNETGS LGTIYPTRKD TFGGFSVHVP YVSRMRRGRP 420 RKDFISFAVT IYDKGPSVEP KGIQPSVEMI LVKDGDKGNH LRKVPEVPLK VSSENEHAEA 480 VDSKGVRNLQ AKVCSAVSKP KIKHGLTRKH HRAWTLSEVV KLVDGVARYG AGKWSEIRKL 540 SFASYSYRTS VDLKDKWRNL IRATQTQLPA QKDGACPRKT NPSIIPIPPS ILLRVKELHE 600 LQSQGGGFTA PVKFSGQDGK VLQGKGSGFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 415 | 421 | RRGRPRK |
2 | 415 | 422 | RRGRPRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.37620 | 0.0 | embryo| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G049194 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G049194_P02 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066844 | 0.0 | BT066844.1 Zea mays full-length cDNA clone ZM_BFb0074H17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001169431.1 | 0.0 | uncharacterized LOC100383302 | ||||
Refseq | XP_008644053.1 | 0.0 | uncharacterized protein LOC100383302 isoform X1 | ||||
Refseq | XP_020409096.1 | 0.0 | uncharacterized protein LOC100383302 isoform X1 | ||||
Refseq | XP_020409097.1 | 0.0 | uncharacterized protein LOC100383302 isoform X1 | ||||
TrEMBL | C0PEX5 | 0.0 | C0PEX5_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G049194_P02 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6966 | 33 | 41 | Representative plant | OGRP1645 | 15 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-81 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G049194_P02 |
Entrez Gene | 100383302 |