PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049194_P01
Common NameMYBR67, umc2585
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family MYB_related
Protein Properties Length: 624aa    MW: 69328.8 Da    PI: 6.5642
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049194_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.4e-08507554347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        +WT  E  +lvd+v+++G g W+ I +        Rt  ++k++w+++
  GRMZM2G049194_P01 507 AWTLSEVVKLVDGVARYGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 554
                        7************************9999999*99***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.154500559IPR017930Myb domain
SuperFamilySSF466891.25E-14502558IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-12502557IPR009057Homeodomain-like
SMARTSM007172.3E-8504557IPR001005SANT/Myb domain
CDDcd116605.25E-18506556No hitNo description
PfamPF002491.1E-5507554IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 624 aa     Download sequence    Send to blast
MEMDDSHGTM VNKSEENDFE KKGTSDPVVY QLVRVEGDGT LVPATEDDVL QFEHFLHNEK  60
VDLPPIEDAD HVEEFFNNDC MLLKKPDLED GSSKLETVEA HTQKLGANLE ENILQSLDDS  120
LSPPSDFRIH SQHSDKLLTE QGANVTRQDN ASTETTKSTV LNDSCCAEKY KADACSRSVC  180
DTSTDPSVSG VNSSMPDFSI LRGEVCLDDL TIRELQEAFR ATFGRQTNVK DKIWLKRRIT  240
MGLTNSYDVP SSGCVVKDYK IVGKDAKNDM SDMDERAKTG LRATSVVIYP GNEGDSPSSS  300
YYQSEDQEDS SKRVPIHNDE PQGNLLGEQC TDKRTRKPTK RYIEELSDIE THDSTVKNSS  360
PAKRPAHDEL LMNPRVAPFN ETGSLGTIYP TRKDTFGGFS VHVPYVSRMR RGRPRKDFIS  420
FAVTIYDKGP SVEPKGIQPS VEMILVKDGD KGNHLRKVPE VPLKVSSENE HAEAVDSKGV  480
RNLQAKVCSA VSKPKIKHGL TRKHHRAWTL SEVVKLVDGV ARYGAGKWSE IRKLSFASYS  540
YRTSVDLKDK WRNLIRATQT QLPAQKDGAC PRKTNPSIIP IPPSILLRVK ELHELQSQGG  600
GFTAPVKFSG QDGKVLQGKG SGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1409415RRGRPRK
2409416RRGRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.376200.0embryo| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049194
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049194_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0668440.0BT066844.1 Zea mays full-length cDNA clone ZM_BFb0074H17 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644058.10.0uncharacterized protein LOC100383302 isoform X6
TrEMBLC0PEX50.0C0PEX5_MAIZE; MYB-related transcription factor
STRINGGRMZM2G049194_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-81TRF-like 6