PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G049194_P01 | ||||||||
Common Name | MYBR67, umc2585 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | MYB_related | ||||||||
Protein Properties | Length: 624aa MW: 69328.8 Da PI: 6.5642 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.3 | 3.4e-08 | 507 | 554 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 +WT E +lvd+v+++G g W+ I + Rt ++k++w+++ GRMZM2G049194_P01 507 AWTLSEVVKLVDGVARYGAGKWSEIRKLSFasySYRTSVDLKDKWRNL 554 7************************9999999*99***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.154 | 500 | 559 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.25E-14 | 502 | 558 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-12 | 502 | 557 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-8 | 504 | 557 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.25E-18 | 506 | 556 | No hit | No description |
Pfam | PF00249 | 1.1E-5 | 507 | 554 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MEMDDSHGTM VNKSEENDFE KKGTSDPVVY QLVRVEGDGT LVPATEDDVL QFEHFLHNEK 60 VDLPPIEDAD HVEEFFNNDC MLLKKPDLED GSSKLETVEA HTQKLGANLE ENILQSLDDS 120 LSPPSDFRIH SQHSDKLLTE QGANVTRQDN ASTETTKSTV LNDSCCAEKY KADACSRSVC 180 DTSTDPSVSG VNSSMPDFSI LRGEVCLDDL TIRELQEAFR ATFGRQTNVK DKIWLKRRIT 240 MGLTNSYDVP SSGCVVKDYK IVGKDAKNDM SDMDERAKTG LRATSVVIYP GNEGDSPSSS 300 YYQSEDQEDS SKRVPIHNDE PQGNLLGEQC TDKRTRKPTK RYIEELSDIE THDSTVKNSS 360 PAKRPAHDEL LMNPRVAPFN ETGSLGTIYP TRKDTFGGFS VHVPYVSRMR RGRPRKDFIS 420 FAVTIYDKGP SVEPKGIQPS VEMILVKDGD KGNHLRKVPE VPLKVSSENE HAEAVDSKGV 480 RNLQAKVCSA VSKPKIKHGL TRKHHRAWTL SEVVKLVDGV ARYGAGKWSE IRKLSFASYS 540 YRTSVDLKDK WRNLIRATQT QLPAQKDGAC PRKTNPSIIP IPPSILLRVK ELHELQSQGG 600 GFTAPVKFSG QDGKVLQGKG SGFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 415 | RRGRPRK |
2 | 409 | 416 | RRGRPRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.37620 | 0.0 | embryo| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G049194 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G049194_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT066844 | 0.0 | BT066844.1 Zea mays full-length cDNA clone ZM_BFb0074H17 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008644058.1 | 0.0 | uncharacterized protein LOC100383302 isoform X6 | ||||
TrEMBL | C0PEX5 | 0.0 | C0PEX5_MAIZE; MYB-related transcription factor | ||||
STRING | GRMZM2G049194_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-81 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G049194_P01 |
Entrez Gene | 100383302 |