PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G049159_P03 | ||||||||
Common Name | GRAS67, LOC100216906 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | GRAS | ||||||||
Protein Properties | Length: 734aa MW: 82633.5 Da PI: 6.5233 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 390.4 | 1.9e-119 | 359 | 730 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+ s+ l+a++l+ ++P+ + GRMZM2G049159_P03 359 LRTILIHCAQAVAADDRRTANELLKQIRHHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYRKLIAKRTT---ASDMLKAYHLYLAACPFKR 447 5789************************************************************999998...89***************** PP GRAS 93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182 +sh++ Nq+Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++Ae+l+vpfe++ + GRMZM2G049159_P03 448 LSHFLSNQTILSMTKHASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAEKLKVPFEYQG-I 538 ************************************************************9*****************************.7 PP GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274 a+++e++++e+L+v ++E+++Vn+ ++ +l de+v+++s+r++vL+++++++P ++++ + +++ + F +rf eal ++salfd+le++ GRMZM2G049159_P03 539 ASKWETIRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETT 630 ******************************************************************************************** PP GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366 +pr++ +r+ +Ere++gre+ nv+aceg++r+er et+++W+ r +aGF + pl+++++++ak ++ ++ + + ++e+sg+l++gWk+r GRMZM2G049159_P03 631 VPRDDAQRALIEREMFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRI 722 ***********************************************************************888****************** PP GRAS 367 LvsvSaWr 374 ++++S W+ GRMZM2G049159_P03 723 IYAISTWK 730 *******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 68.304 | 333 | 710 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.7E-117 | 359 | 730 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0025541 | anatomy | bundle sheath cell | ||||
PO:0025589 | anatomy | leaf lamina tip | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 734 aa Download sequence Send to blast |
MGLDNTYGDL SGMFYGGLSY DGYTDHSSAS DYFRFADPLP ATVPQMAPEA CSNPSSTVSR 60 ANTETDNPED WEFISDESLD YISRMLMEED IDEKVSMYQA ESAALRAAAK PFYDILGHKF 120 PPSPDRQLIS WSMDSPSESS SSICTQSVAS TVTSSSVGGT VDSNRRYDIG LSEQLEAYRG 180 LCGQASHPLV GTSSDASNAV DVLEDPLITN GQIPEYLFES LPTWDFRRGI EEAQKFLPVN 240 NKLVIGLEAG GIARPQEARK DVSLNAKKAD ALKVKKNRQS EDLDVIEGRN IKQSAFCSDE 300 PDWIEMFDDL LLQTEKKATD LRELMRNEAS KNSQVTQTKG PSGPRPRGRK PTKKDVVDLR 360 TILIHCAQAV AADDRRTANE LLKQIRHHSK PNGDGTQRLA HCFADGLEAR LAGTGSQLYR 420 KLIAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKHASKVHII DFGIYFGFQW 480 PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAEKLK VPFEYQGIAS 540 KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV 600 NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IEREMFGREA LNVIACEGSD 660 RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG 720 RIIYAISTWK PKNN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 4e-50 | 363 | 730 | 8 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.37155 | 0.0 | ear| embryo| endosperm| meristem| ovary| shoot |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G049159 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G049159_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727971 | 0.0 | KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001346447.1 | 0.0 | uncharacterized protein LOC100216906 | ||||
TrEMBL | A0A060D1U6 | 0.0 | A0A060D1U6_MAIZE; GRAS transcription factor (Fragment) | ||||
STRING | GRMZM2G049159_P01 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G049159_P03 |
Entrez Gene | 100216906 |