PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G049159_P01
Common NameGRAS67, LOC100216906
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GRAS
Protein Properties Length: 734aa    MW: 82633.5 Da    PI: 6.5233
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G049159_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS390.41.9e-1193597301374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L++cA+av+++d + a++lL+++++++ p+gd +qRla++f+ +L+arla+++s+ly++l +++t+    s+ l+a++l+  ++P+ +
  GRMZM2G049159_P01 359 LRTILIHCAQAVAADDRRTANELLKQIRHHSKPNGDGTQRLAHCFADGLEARLAGTGSQLYRKLIAKRTT---ASDMLKAYHLYLAACPFKR 447
                        5789************************************************************999998...89***************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +sh++ Nq+Il  ++++++vHiiDf+i  G+QWp+L++ L++R++gpp lRiTg++ p++g   +e++eetg+rLa++Ae+l+vpfe++  +
  GRMZM2G049159_P01 448 LSHFLSNQTILSMTKHASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPTERIEETGQRLAEYAEKLKVPFEYQG-I 538
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+++e++++e+L+v ++E+++Vn+ ++  +l de+v+++s+r++vL+++++++P ++++   + +++ + F +rf eal ++salfd+le++
  GRMZM2G049159_P01 539 ASKWETIRVEDLKVGKDEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIRQVNPAIFIHGIVNGSYSVPFFITRFREALFHFSALFDMLETT 630
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pr++ +r+ +Ere++gre+ nv+aceg++r+er et+++W+ r  +aGF + pl+++++++ak  ++ ++ + + ++e+sg+l++gWk+r 
  GRMZM2G049159_P01 631 VPRDDAQRALIEREMFGREALNVIACEGSDRVERPETYKQWQVRNLRAGFVQSPLNQEIVMKAKDKVKDIYHKDFVIDEDSGWLLQGWKGRI 722
                        ***********************************************************************888****************** PP

               GRAS 367 LvsvSaWr 374
                        ++++S W+
  GRMZM2G049159_P01 723 IYAISTWK 730
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.304333710IPR005202Transcription factor GRAS
PfamPF035146.7E-117359730IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 734 aa     Download sequence    Send to blast
MGLDNTYGDL SGMFYGGLSY DGYTDHSSAS DYFRFADPLP ATVPQMAPEA CSNPSSTVSR  60
ANTETDNPED WEFISDESLD YISRMLMEED IDEKVSMYQA ESAALRAAAK PFYDILGHKF  120
PPSPDRQLIS WSMDSPSESS SSICTQSVAS TVTSSSVGGT VDSNRRYDIG LSEQLEAYRG  180
LCGQASHPLV GTSSDASNAV DVLEDPLITN GQIPEYLFES LPTWDFRRGI EEAQKFLPVN  240
NKLVIGLEAG GIARPQEARK DVSLNAKKAD ALKVKKNRQS EDLDVIEGRN IKQSAFCSDE  300
PDWIEMFDDL LLQTEKKATD LRELMRNEAS KNSQVTQTKG PSGPRPRGRK PTKKDVVDLR  360
TILIHCAQAV AADDRRTANE LLKQIRHHSK PNGDGTQRLA HCFADGLEAR LAGTGSQLYR  420
KLIAKRTTAS DMLKAYHLYL AACPFKRLSH FLSNQTILSM TKHASKVHII DFGIYFGFQW  480
PCLIRRLSKR EGGPPVLRIT GIDVPQPGFR PTERIEETGQ RLAEYAEKLK VPFEYQGIAS  540
KWETIRVEDL KVGKDEVVIV NCLYRFRNLI DETVAVDSPR NRVLNTIRQV NPAIFIHGIV  600
NGSYSVPFFI TRFREALFHF SALFDMLETT VPRDDAQRAL IEREMFGREA LNVIACEGSD  660
RVERPETYKQ WQVRNLRAGF VQSPLNQEIV MKAKDKVKDI YHKDFVIDED SGWLLQGWKG  720
RIIYAISTWK PKNN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-503637308375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.371550.0ear| embryo| endosperm| meristem| ovary| shoot
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G049159
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G049159_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7279710.0KJ727971.1 Zea mays clone pUT6085 GRAS transcription factor (GRAS67) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001346447.10.0uncharacterized protein LOC100216906
TrEMBLA0A060D1U60.0A0A060D1U6_MAIZE; GRAS transcription factor (Fragment)
STRINGGRMZM2G049159_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150538118
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.10.0GRAS family protein