PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G049027_P01 | ||||||||
Common Name | Zm.127137 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | C3H | ||||||||
Protein Properties | Length: 251aa MW: 27293.2 Da PI: 8.1038 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.6 | 1.6e-06 | 115 | 134 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ + G+C+ G++C++ H GRMZM2G049027_P01 115 ECNMYKM-GFCPNGPNCRYKH 134 6776666.************* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.6E-5 | 56 | 82 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.957 | 56 | 83 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.2E-5 | 57 | 83 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-6 | 57 | 81 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.01 | 84 | 110 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.596 | 84 | 109 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.831 | 110 | 137 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0026 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 116 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:1900363 | Biological Process | regulation of mRNA polyadenylation | ||||
GO:2000031 | Biological Process | regulation of salicylic acid mediated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0004521 | Molecular Function | endoribonuclease activity | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MDDSDGGLSF DFEGGLDSAP ASGGGGPVPS STDPGAGVGG GGDGLGMHGR GRGRGSYRQT 60 VCRHWLRGLC MKGEACGFLH QFDKARMPVC RFFRDFGECR EPDCAYKHSY DDVKECNMYK 120 MGFCPNGPNC RYKHIKLPGP PPSVEEVLQK ILQMRSFNRY SQNRNNNYNH QGERPQHPQG 180 SGLPNQNSAE NATAVDPPAG GQQAQTLNQQ PPQQQQKPNT NDQAQGVSNG HQATRIATPL 240 PQGPSRCVWS F |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6dnh_C | 1e-20 | 58 | 136 | 65 | 145 | Cleavage and polyadenylation specificity factor subunit 4 |
6fbs_C | 7e-21 | 8 | 136 | 11 | 144 | Cleavage and polyadenylation specificity factor subunit 4 |
6fuw_C | 7e-21 | 8 | 136 | 11 | 144 | Cleavage and polyadenylation specificity factor subunit 4 |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G049027 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G049027_P01 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962679 | 0.0 | EU962679.1 Zea mays clone 244673 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020394913.1 | 1e-178 | zinc finger CCCH domain-containing protein 45 | ||||
Swissprot | Q0DA50 | 1e-106 | C3H45_ORYSJ; Zinc finger CCCH domain-containing protein 45 | ||||
TrEMBL | A0A1D6LPN1 | 0.0 | A0A1D6LPN1_MAIZE; 30-kDa cleavage and polyadenylation specificity factor 30 | ||||
STRING | GRMZM2G049027_P01 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5989 | 24 | 28 | Representative plant | OGRP4992 | 3 | 4 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G049027_P01 |