PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048987_P03
Common NameLOC103633222, Zm.4139
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family FAR1
Protein Properties Length: 779aa    MW: 88945.9 Da    PI: 6.9118
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048987_P03genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.15.2e-2254140290
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         Y++Y++++GFsvrk k+++   +++i +++++Cskeg + +e  +  +++ +r+ trt+Cka+++ + +++g+w v++++  HnH+la
  GRMZM2G048987_P03  54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140
                        7********************9*******************99988..9999***********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.2E-2054140IPR004330FAR1 DNA binding domain
PfamPF105513.2E-33261354IPR018289MULE transposase domain
PROSITE profilePS509669.186542578IPR007527Zinc finger, SWIM-type
PfamPF044345.6E-6544575IPR007527Zinc finger, SWIM-type
SMARTSM005757.6E-6553580IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0006310anatomytassel floret
PO:0006339anatomyjuvenile vascular leaf
PO:0006340anatomyadult vascular leaf
PO:0006341anatomyprimary shoot system
PO:0006354anatomyear floret
PO:0006505anatomycentral spike of ear inflorescence
PO:0008018anatomytransition vascular leaf
PO:0009001anatomyfruit
PO:0009009anatomyplant embryo
PO:0009025anatomyvascular leaf
PO:0009054anatomyinflorescence bract
PO:0009066anatomyanther
PO:0009074anatomystyle
PO:0009084anatomypericarp
PO:0009089anatomyendosperm
PO:0020040anatomyleaf base
PO:0020104anatomyleaf sheath
PO:0020126anatomytassel inflorescence
PO:0020127anatomyprimary root
PO:0020136anatomyear inflorescence
PO:0020142anatomystem internode
PO:0020148anatomyshoot apical meristem
PO:0025142anatomyleaf tip
PO:0025287anatomyseedling coleoptile
PO:0001007developmental stagepollen development stage
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0001052developmental stagevascular leaf expansion stage
PO:0001053developmental stagevascular leaf post-expansion stage
PO:0001083developmental stageinflorescence development stage
PO:0001094developmental stageplant embryo coleoptilar stage
PO:0001095developmental stageplant embryo true leaf formation stage
PO:0001180developmental stageplant proembryo stage
PO:0007001developmental stageearly whole plant fruit ripening stage
PO:0007003developmental stageIL.03 full inflorescence length reached stage
PO:0007006developmental stageIL.00 inflorescence just visible stage
PO:0007015developmental stageradicle emergence stage
PO:0007016developmental stagewhole plant flowering stage
PO:0007022developmental stageseed imbibition stage
PO:0007026developmental stageFL.00 first flower(s) open stage
PO:0007031developmental stagemid whole plant fruit ripening stage
PO:0007032developmental stagewhole plant fruit formation stage up to 10%
PO:0007045developmental stagecoleoptile emergence stage
PO:0007063developmental stageLP.07 seven leaves visible stage
PO:0007065developmental stageLP.05 five leaves visible stage
PO:0007072developmental stageLP.18 eighteen leaves visible stage
PO:0007094developmental stageLP.01 one leaf visible stage
PO:0007101developmental stageLP.09 nine leaves visible stage
PO:0007104developmental stageLP.15 fifteen leaves visible stage
PO:0007106developmental stageLP.03 three leaves visible stage
PO:0007112developmental stage1 main shoot growth stage
PO:0007116developmental stageLP.11 eleven leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007633developmental stageendosperm development stage
PO:0021004developmental stageinflorescence initiation stage
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDCSQDPQEE SHQRRENGEE AEKTADYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH  60
RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV  120
DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPLASTEA HPINGFSDMT  180
GDIVENSGYT IRECYNQVGM QSITVIEAGD SQSLVSYFKH KTNEEGMFYW DVQVDQEGRM  240
TNFFYRDGKS RNDYGCFGDA IIFDTTYRTN KYNLICAPFV GVDHHWQNVV FGCAFLLDES  300
VTSYAWVFKS FLESMGGRSP KSIFTDQDEA IMQAVKQVFP NTQHCFSYWH ILKNAQSHLG  360
SLNTSQAFQS MFTKCMQGSD SEEDFKESWT AMIQEYKLQD NNWLIDLYTF HHKWCSAFNK  420
DTFDGGINSS QWGEVSSNIL NGISDENTSL TRFALLLEKV VKDLRRNESE EDFRCSQTAP  480
VRAIKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE TSSGGNLLRF GITMQGRGSK  540
VWDVVLDTST MEISCGCRKF ERMGLLCSHA LKVFTLQNVD TIPEKYVLKR WTKDARRSMY  600
TLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IIKSQELEES RKIFWDSLET GEKALEVFFE  660
MRNMRTQAAK DADKNVKKKK KTSKGTNPKK AKQAPGVSST GPELIVHTNE HQFQSSQDAQ  720
GNATIGRPYY YQAFPNAPIQ PNQMYMHTNM HTMPLCTPQE LSAYAAIRPN SMFGGAKNI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Zm.41390.0ear| endosperm
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048987
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048987_P03
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001337121.10.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_020397399.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
RefseqXP_020397400.10.0protein FAR1-RELATED SEQUENCE 5 isoform X2
TrEMBLA0A1B6QEH50.0A0A1B6QEH5_SORBI; Uncharacterized protein
STRINGGRMZM2G048987_P020.0(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-101FAR1-related sequence 5