PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GRMZM2G048987_P03 | ||||||||
Common Name | LOC103633222, Zm.4139 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
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Family | FAR1 | ||||||||
Protein Properties | Length: 779aa MW: 88945.9 Da PI: 6.9118 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 70.1 | 5.2e-22 | 54 | 140 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ +++i +++++Cskeg + +e + +++ +r+ trt+Cka+++ + +++g+w v++++ HnH+la GRMZM2G048987_P03 54 LYCDYGHRIGFSVRKGKQSYFIGTKNIRTKDYYCSKEGLKYDEPVT--EANFNRPDTRTNCKAMIRFRVDEKGRWTVIRFVPVHNHQLA 140 7********************9*******************99988..9999***********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-20 | 54 | 140 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 3.2E-33 | 261 | 354 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.186 | 542 | 578 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 5.6E-6 | 544 | 575 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 7.6E-6 | 553 | 580 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0006310 | anatomy | tassel floret | ||||
PO:0006339 | anatomy | juvenile vascular leaf | ||||
PO:0006340 | anatomy | adult vascular leaf | ||||
PO:0006341 | anatomy | primary shoot system | ||||
PO:0006354 | anatomy | ear floret | ||||
PO:0006505 | anatomy | central spike of ear inflorescence | ||||
PO:0008018 | anatomy | transition vascular leaf | ||||
PO:0009001 | anatomy | fruit | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009054 | anatomy | inflorescence bract | ||||
PO:0009066 | anatomy | anther | ||||
PO:0009074 | anatomy | style | ||||
PO:0009084 | anatomy | pericarp | ||||
PO:0009089 | anatomy | endosperm | ||||
PO:0020040 | anatomy | leaf base | ||||
PO:0020104 | anatomy | leaf sheath | ||||
PO:0020126 | anatomy | tassel inflorescence | ||||
PO:0020127 | anatomy | primary root | ||||
PO:0020136 | anatomy | ear inflorescence | ||||
PO:0020142 | anatomy | stem internode | ||||
PO:0020148 | anatomy | shoot apical meristem | ||||
PO:0025142 | anatomy | leaf tip | ||||
PO:0025287 | anatomy | seedling coleoptile | ||||
PO:0001007 | developmental stage | pollen development stage | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0001052 | developmental stage | vascular leaf expansion stage | ||||
PO:0001053 | developmental stage | vascular leaf post-expansion stage | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0001094 | developmental stage | plant embryo coleoptilar stage | ||||
PO:0001095 | developmental stage | plant embryo true leaf formation stage | ||||
PO:0001180 | developmental stage | plant proembryo stage | ||||
PO:0007001 | developmental stage | early whole plant fruit ripening stage | ||||
PO:0007003 | developmental stage | IL.03 full inflorescence length reached stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage | ||||
PO:0007015 | developmental stage | radicle emergence stage | ||||
PO:0007016 | developmental stage | whole plant flowering stage | ||||
PO:0007022 | developmental stage | seed imbibition stage | ||||
PO:0007026 | developmental stage | FL.00 first flower(s) open stage | ||||
PO:0007031 | developmental stage | mid whole plant fruit ripening stage | ||||
PO:0007032 | developmental stage | whole plant fruit formation stage up to 10% | ||||
PO:0007045 | developmental stage | coleoptile emergence stage | ||||
PO:0007063 | developmental stage | LP.07 seven leaves visible stage | ||||
PO:0007065 | developmental stage | LP.05 five leaves visible stage | ||||
PO:0007072 | developmental stage | LP.18 eighteen leaves visible stage | ||||
PO:0007094 | developmental stage | LP.01 one leaf visible stage | ||||
PO:0007101 | developmental stage | LP.09 nine leaves visible stage | ||||
PO:0007104 | developmental stage | LP.15 fifteen leaves visible stage | ||||
PO:0007106 | developmental stage | LP.03 three leaves visible stage | ||||
PO:0007112 | developmental stage | 1 main shoot growth stage | ||||
PO:0007116 | developmental stage | LP.11 eleven leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007633 | developmental stage | endosperm development stage | ||||
PO:0021004 | developmental stage | inflorescence initiation stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MDCSQDPQEE SHQRRENGEE AEKTADYGNA LSRKEVTEEL LGCVVHSEEE AYRLYCDYGH 60 RIGFSVRKGK QSYFIGTKNI RTKDYYCSKE GLKYDEPVTE ANFNRPDTRT NCKAMIRFRV 120 DEKGRWTVIR FVPVHNHQLA KPGERHMLRS AKSLAVGKSG VIDPLASTEA HPINGFSDMT 180 GDIVENSGYT IRECYNQVGM QSITVIEAGD SQSLVSYFKH KTNEEGMFYW DVQVDQEGRM 240 TNFFYRDGKS RNDYGCFGDA IIFDTTYRTN KYNLICAPFV GVDHHWQNVV FGCAFLLDES 300 VTSYAWVFKS FLESMGGRSP KSIFTDQDEA IMQAVKQVFP NTQHCFSYWH ILKNAQSHLG 360 SLNTSQAFQS MFTKCMQGSD SEEDFKESWT AMIQEYKLQD NNWLIDLYTF HHKWCSAFNK 420 DTFDGGINSS QWGEVSSNIL NGISDENTSL TRFALLLEKV VKDLRRNESE EDFRCSQTAP 480 VRAIKHSTVL KQAAESYTHR IYKLFEAEFL DGCGATSCHE TSSGGNLLRF GITMQGRGSK 540 VWDVVLDTST MEISCGCRKF ERMGLLCSHA LKVFTLQNVD TIPEKYVLKR WTKDARRSMY 600 TLAQDDSTQQ ECTEAELAYR NRAMQYAYNL IIKSQELEES RKIFWDSLET GEKALEVFFE 660 MRNMRTQAAK DADKNVKKKK KTSKGTNPKK AKQAPGVSST GPELIVHTNE HQFQSSQDAQ 720 GNATIGRPYY YQAFPNAPIQ PNQMYMHTNM HTMPLCTPQE LSAYAAIRPN SMFGGAKNI |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Zm.4139 | 0.0 | ear| endosperm |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | GRMZM2G048987 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GRMZM2G048987_P03 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001337121.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_020397399.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
Refseq | XP_020397400.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 isoform X2 | ||||
TrEMBL | A0A1B6QEH5 | 0.0 | A0A1B6QEH5_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G048987_P02 | 0.0 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-101 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | GRMZM2G048987_P03 |
Entrez Gene | 103633222 |