PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G048850_P01
Common NameGATA33, LOC100273991, ZEAMMB73_162588
Organism
Zea mays
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family GATA
Protein Properties Length: 241aa    MW: 25477.7 Da    PI: 7.5079
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G048850_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA44.32.4e-14112142131
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyr 31 
                        C++Cg+t+Tp+WR  p g+  LCnaC ++ r
  GRMZM2G048850_P01 112 CVQCGATETPQWRIQPTGQGALCNACRIRLR 142
                        ****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004019.4E-9106162IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.95106142IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-10107148No hitNo description
Gene3DG3DSA:3.30.50.103.6E-11109143IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.45E-10111142No hitNo description
PfamPF003206.7E-12112142IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MTSLSMPEQV HGHSPQETVA MASDEPQSQL TGLGDPKASR SDAATMVTTG GAGDGEEVMG  60
AESPLDFVLV GTPWGLLLAP TPLASMKQDE EEVSAPPCPE KTPAAANGAK QCVQCGATET  120
PQWRIQPTGQ GALCNACRIR LRPAEALREK VHVHAHRPSA PALGPATSTA ISEPPADGWI  180
SGAWMDFDAH LLKVTPPPPA RRQESPSPTT EPAPEKKTRK RKPSTRRCQA ASTAASRPRR  240
H
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G048850
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G048850_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0421610.0BT042161.1 Zea mays full-length cDNA clone ZM_BFb0149A15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141849.11e-173uncharacterized protein LOC100273991
TrEMBLB4FYH31e-172B4FYH3_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G048850_P011e-173(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72732646
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.12e-08GATA transcription factor 4